Results 41 - 60 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8982 | 5' | -55.8 | NC_002512.2 | + | 117073 | 0.72 | 0.73517 |
Target: 5'- aACCGGGUggCCGUcaacgccuucaacAcCAAUCGGGUCAUCa -3' miRNA: 3'- -UGGCCUA--GGCG-------------UaGUUGGCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 141195 | 0.72 | 0.707206 |
Target: 5'- uACCGGAUCaugcaGCAgcgCAGCCGGGgCGg- -3' miRNA: 3'- -UGGCCUAGg----CGUa--GUUGGCCCaGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 20432 | 0.73 | 0.687612 |
Target: 5'- cGCCGGAgCCGaagAUCAGCCGgccgaugacGGUCAUCc -3' miRNA: 3'- -UGGCCUaGGCg--UAGUUGGC---------CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 80638 | 0.73 | 0.657915 |
Target: 5'- uCCGGccGUCCGCGgcggCGgcGCCGGGUcCGUCg -3' miRNA: 3'- uGGCC--UAGGCGUa---GU--UGGCCCA-GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 85192 | 0.75 | 0.568555 |
Target: 5'- -aCGGGUCCcCGUgGgucGCCGGGUCGUCg -3' miRNA: 3'- ugGCCUAGGcGUAgU---UGGCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 6353 | 0.7 | 0.814802 |
Target: 5'- gGCCGGcgggCCGCGggcgcgugccguucUCcGCCGuGGUCGUCg -3' miRNA: 3'- -UGGCCua--GGCGU--------------AGuUGGC-CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 57009 | 0.7 | 0.820685 |
Target: 5'- gGCCGGGUCgGCgGUCuGACCGGGgggagcggaggccgCGUCc -3' miRNA: 3'- -UGGCCUAGgCG-UAG-UUGGCCCa-------------GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 151884 | 0.68 | 0.916602 |
Target: 5'- cGCCGGcgAUCCGCGgaUCGuuuCCGGuaggcaugccGUCGUCg -3' miRNA: 3'- -UGGCC--UAGGCGU--AGUu--GGCC----------CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 108938 | 0.68 | 0.910293 |
Target: 5'- aGCCGGuuaccgCCGCccuugcccgucggGUCGcCCGGGUcCGUCa -3' miRNA: 3'- -UGGCCua----GGCG-------------UAGUuGGCCCA-GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 35044 | 0.68 | 0.898758 |
Target: 5'- uCgGGGUCCGCAcgGGCCGGGaCAg- -3' miRNA: 3'- uGgCCUAGGCGUagUUGGCCCaGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 91980 | 0.68 | 0.892368 |
Target: 5'- uCCGGAgggCCGCGU---CCGGGUC-UCc -3' miRNA: 3'- uGGCCUa--GGCGUAguuGGCCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 8919 | 0.68 | 0.885761 |
Target: 5'- gGCCaGGG-CgGCcUCGGCCGGGUCGg- -3' miRNA: 3'- -UGG-CCUaGgCGuAGUUGGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 154320 | 0.69 | 0.871914 |
Target: 5'- gACCgGGAUCCGgaGUCGuCCGcGUCGUCg -3' miRNA: 3'- -UGG-CCUAGGCg-UAGUuGGCcCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 132011 | 0.69 | 0.864683 |
Target: 5'- --gGGAUCuCGCGUCGGCgggCGGGUcCGUCu -3' miRNA: 3'- uggCCUAG-GCGUAGUUG---GCCCA-GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 67761 | 0.69 | 0.857253 |
Target: 5'- aGCCGGggUCGUcUCcggcGCCgGGGUCGUCg -3' miRNA: 3'- -UGGCCuaGGCGuAGu---UGG-CCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 110546 | 0.7 | 0.841029 |
Target: 5'- gACCGGcguuUCCGCccccgcgcgggagGUCcuGCCGGGUCAg- -3' miRNA: 3'- -UGGCCu---AGGCG-------------UAGu-UGGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 17381 | 0.7 | 0.83302 |
Target: 5'- gAUCGuGGUCCGCGUcCAGCCcgaggucGGaGUCGUCg -3' miRNA: 3'- -UGGC-CUAGGCGUA-GUUGG-------CC-CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 122812 | 0.7 | 0.825664 |
Target: 5'- -gCGGGUCCccuacguccagcGCGUCGACCGGGacuucucCGUCg -3' miRNA: 3'- ugGCCUAGG------------CGUAGUUGGCCCa------GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 140119 | 0.7 | 0.825664 |
Target: 5'- uGCCGGAcgUCCGag--AACUGGGUCAUg -3' miRNA: 3'- -UGGCCU--AGGCguagUUGGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 113144 | 0.7 | 0.825664 |
Target: 5'- gGCCuGGUCCaucgcCAUCAGCCGGGccaCGUCg -3' miRNA: 3'- -UGGcCUAGGc----GUAGUUGGCCCa--GUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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