Results 81 - 100 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8982 | 5' | -55.8 | NC_002512.2 | + | 153342 | 0.68 | 0.904929 |
Target: 5'- gGCCGG-UCCGgGUCGGC-GGGUCc-- -3' miRNA: 3'- -UGGCCuAGGCgUAGUUGgCCCAGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 88494 | 0.68 | 0.904929 |
Target: 5'- -gUGGAUCCGCAgccgcuCCGGGUgCAUg -3' miRNA: 3'- ugGCCUAGGCGUaguu--GGCCCA-GUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 218443 | 0.68 | 0.892368 |
Target: 5'- cCCGGcccccGUCCGCggcGUCcccgcgGACCGcGGUCAUCu -3' miRNA: 3'- uGGCC-----UAGGCG---UAG------UUGGC-CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 107209 | 0.67 | 0.941833 |
Target: 5'- aGCCGGG-CCGCGgccggggAGCCGcGGUCAccgUCg -3' miRNA: 3'- -UGGCCUaGGCGUag-----UUGGC-CCAGU---AG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 108470 | 0.67 | 0.941833 |
Target: 5'- cGCCGGGUUCGCGcUgAACgugacGGUCGUCa -3' miRNA: 3'- -UGGCCUAGGCGU-AgUUGgc---CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 124097 | 0.66 | 0.961496 |
Target: 5'- -aCGGAcgCCGCGcCuuuCCGGGUCAc- -3' miRNA: 3'- ugGCCUa-GGCGUaGuu-GGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 209435 | 0.66 | 0.961496 |
Target: 5'- cGCgCGGAUgaCCGuCAUCGGCCGGcUgAUCu -3' miRNA: 3'- -UG-GCCUA--GGC-GUAGUUGGCCcAgUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 156417 | 0.66 | 0.961496 |
Target: 5'- cCCGGAUCgGCAUgcuguccgCGGCCGGGc---- -3' miRNA: 3'- uGGCCUAGgCGUA--------GUUGGCCCaguag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 184753 | 0.66 | 0.961496 |
Target: 5'- --aGGAUCgGCGggCGGcCCGuGGUCGUCg -3' miRNA: 3'- uggCCUAGgCGUa-GUU-GGC-CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 175708 | 0.66 | 0.961496 |
Target: 5'- aGCUGGAUCCGgAUCccgcguCC-GGUCAUg -3' miRNA: 3'- -UGGCCUAGGCgUAGuu----GGcCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 184210 | 0.66 | 0.960468 |
Target: 5'- cCCGGA-CCGCggguucucucugggGUCGACCgucGGGUCGg- -3' miRNA: 3'- uGGCCUaGGCG--------------UAGUUGG---CCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 155139 | 0.66 | 0.954281 |
Target: 5'- cGCCGGGUCCcCGaaAACa-GGUCGUCg -3' miRNA: 3'- -UGGCCUAGGcGUagUUGgcCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 99116 | 0.66 | 0.954281 |
Target: 5'- gGCCGcuccaagaGAUCgCGCA-CGGCCGGaUCGUCg -3' miRNA: 3'- -UGGC--------CUAG-GCGUaGUUGGCCcAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 102347 | 0.66 | 0.950352 |
Target: 5'- aGCCGGGUCCggGCGUCggUCGuccGGagGUCc -3' miRNA: 3'- -UGGCCUAGG--CGUAGuuGGC---CCagUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 225592 | 0.66 | 0.950352 |
Target: 5'- cGCCGGGUCUuCGacCAGCUGGccGUCGUCg -3' miRNA: 3'- -UGGCCUAGGcGUa-GUUGGCC--CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 145635 | 0.67 | 0.946203 |
Target: 5'- cCCGccuUCCGCGUCGagauGCCGGGcCcgCg -3' miRNA: 3'- uGGCcu-AGGCGUAGU----UGGCCCaGuaG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 195049 | 0.67 | 0.946203 |
Target: 5'- cGCCGcGGcCCGCGggCGGgaGGGUCGUCc -3' miRNA: 3'- -UGGC-CUaGGCGUa-GUUggCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 173297 | 0.67 | 0.943608 |
Target: 5'- cGCUGGAgggCCGuCAUCGGCUccaacgccgccugcgGGGUCuUCg -3' miRNA: 3'- -UGGCCUa--GGC-GUAGUUGG---------------CCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 206717 | 0.67 | 0.941833 |
Target: 5'- cCCGG-UCCGUuUC-ACCGGGcUCAUg -3' miRNA: 3'- uGGCCuAGGCGuAGuUGGCCC-AGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 113154 | 0.67 | 0.941833 |
Target: 5'- cGCCGGccUCGCcgCGGCCGGG-CGg- -3' miRNA: 3'- -UGGCCuaGGCGuaGUUGGCCCaGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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