miRNA display CGI


Results 121 - 131 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 215132 0.67 0.927374
Target:  5'- gGCCgGGGUCCGCG-CGACgGGGgaggCGa- -3'
miRNA:   3'- -UGG-CCUAGGCGUaGUUGgCCCa---GUag -5'
8982 5' -55.8 NC_002512.2 + 103456 0.67 0.927374
Target:  5'- aGCgCGGGUCCGaggacgCGGCuCGGGUC-UCg -3'
miRNA:   3'- -UG-GCCUAGGCgua---GUUG-GCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 124790 0.67 0.927374
Target:  5'- cCCGGGUCCGgGUCcagcugacggAGCCGGGa---- -3'
miRNA:   3'- uGGCCUAGGCgUAG----------UUGGCCCaguag -5'
8982 5' -55.8 NC_002512.2 + 45523 0.67 0.932419
Target:  5'- gACgGGA-CCGCAaucCGAUCGGGgCGUCg -3'
miRNA:   3'- -UGgCCUaGGCGUa--GUUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 167456 0.67 0.932419
Target:  5'- uCCGGA---GCAUCGucuCCGaGGUCGUCg -3'
miRNA:   3'- uGGCCUaggCGUAGUu--GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 191729 0.67 0.932419
Target:  5'- -gUGGAccUCCGCGUCggUCGGGgUGUCc -3'
miRNA:   3'- ugGCCU--AGGCGUAGuuGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 95134 0.67 0.932419
Target:  5'- aACCGGAcggUCCGCccCGG-CGGGUCGa- -3'
miRNA:   3'- -UGGCCU---AGGCGuaGUUgGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 217581 0.67 0.932419
Target:  5'- aGCCGG-UCCgGCGgcgCcGCCucggGGGUCGUCg -3'
miRNA:   3'- -UGGCCuAGG-CGUa--GuUGG----CCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 77997 0.67 0.937239
Target:  5'- uACCGGAaacgaUCCGCGgaucGCCGGcgcccacgaGUCAUCc -3'
miRNA:   3'- -UGGCCU-----AGGCGUagu-UGGCC---------CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 107209 0.67 0.941833
Target:  5'- aGCCGGG-CCGCGgccggggAGCCGcGGUCAccgUCg -3'
miRNA:   3'- -UGGCCUaGGCGUag-----UUGGC-CCAGU---AG- -5'
8982 5' -55.8 NC_002512.2 + 42242 0.66 0.964791
Target:  5'- uGCCGGAuauuaccgaUCCGCGgaCGGCCGaaagagggcgauGGUUAUCc -3'
miRNA:   3'- -UGGCCU---------AGGCGUa-GUUGGC------------CCAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.