miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 167456 0.67 0.932419
Target:  5'- uCCGGA---GCAUCGucuCCGaGGUCGUCg -3'
miRNA:   3'- uGGCCUaggCGUAGUu--GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 217581 0.67 0.932419
Target:  5'- aGCCGG-UCCgGCGgcgCcGCCucggGGGUCGUCg -3'
miRNA:   3'- -UGGCCuAGG-CGUa--GuUGG----CCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 225592 0.66 0.950352
Target:  5'- cGCCGGGUCUuCGacCAGCUGGccGUCGUCg -3'
miRNA:   3'- -UGGCCUAGGcGUa-GUUGGCC--CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 156417 0.66 0.961496
Target:  5'- cCCGGAUCgGCAUgcuguccgCGGCCGGGc---- -3'
miRNA:   3'- uGGCCUAGgCGUA--------GUUGGCCCaguag -5'
8982 5' -55.8 NC_002512.2 + 193114 0.68 0.892368
Target:  5'- cGCCGGAgagCUGCGUCcGGCCcgacgucacGGUCGUCc -3'
miRNA:   3'- -UGGCCUa--GGCGUAG-UUGGc--------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 156033 0.67 0.927374
Target:  5'- cCUGGggCCaGUG-CAugCGGGUCGUCg -3'
miRNA:   3'- uGGCCuaGG-CGUaGUugGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 107209 0.67 0.941833
Target:  5'- aGCCGGG-CCGCGgccggggAGCCGcGGUCAccgUCg -3'
miRNA:   3'- -UGGCCUaGGCGUag-----UUGGC-CCAGU---AG- -5'
8982 5' -55.8 NC_002512.2 + 209435 0.66 0.961496
Target:  5'- cGCgCGGAUgaCCGuCAUCGGCCGGcUgAUCu -3'
miRNA:   3'- -UG-GCCUA--GGC-GUAGUUGGCCcAgUAG- -5'
8982 5' -55.8 NC_002512.2 + 215132 0.67 0.927374
Target:  5'- gGCCgGGGUCCGCG-CGACgGGGgaggCGa- -3'
miRNA:   3'- -UGG-CCUAGGCGUaGUUGgCCCa---GUag -5'
8982 5' -55.8 NC_002512.2 + 124097 0.66 0.961496
Target:  5'- -aCGGAcgCCGCGcCuuuCCGGGUCAc- -3'
miRNA:   3'- ugGCCUa-GGCGUaGuu-GGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 77997 0.67 0.937239
Target:  5'- uACCGGAaacgaUCCGCGgaucGCCGGcgcccacgaGUCAUCc -3'
miRNA:   3'- -UGGCCU-----AGGCGUagu-UGGCC---------CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 45523 0.67 0.932419
Target:  5'- gACgGGA-CCGCAaucCGAUCGGGgCGUCg -3'
miRNA:   3'- -UGgCCUaGGCGUa--GUUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 206717 0.67 0.941833
Target:  5'- cCCGG-UCCGUuUC-ACCGGGcUCAUg -3'
miRNA:   3'- uGGCCuAGGCGuAGuUGGCCC-AGUAg -5'
8982 5' -55.8 NC_002512.2 + 145635 0.67 0.946203
Target:  5'- cCCGccuUCCGCGUCGagauGCCGGGcCcgCg -3'
miRNA:   3'- uGGCcu-AGGCGUAGU----UGGCCCaGuaG- -5'
8982 5' -55.8 NC_002512.2 + 155139 0.66 0.954281
Target:  5'- cGCCGGGUCCcCGaaAACa-GGUCGUCg -3'
miRNA:   3'- -UGGCCUAGGcGUagUUGgcCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 184753 0.66 0.961496
Target:  5'- --aGGAUCgGCGggCGGcCCGuGGUCGUCg -3'
miRNA:   3'- uggCCUAGgCGUa-GUU-GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 43642 0.69 0.857253
Target:  5'- gGCUGGAUCCGCuguUCca-CGGGUCc-- -3'
miRNA:   3'- -UGGCCUAGGCGu--AGuugGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 126979 0.68 0.885761
Target:  5'- --gGGGUCCGCGguccucuccCAGCgCGGGUCGUa -3'
miRNA:   3'- uggCCUAGGCGUa--------GUUG-GCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 153342 0.68 0.904929
Target:  5'- gGCCGG-UCCGgGUCGGC-GGGUCc-- -3'
miRNA:   3'- -UGGCCuAGGCgUAGUUGgCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 207504 0.67 0.922101
Target:  5'- uCCGGAUCCGCGacCGACgacgaggaCGGGgccgCGUCc -3'
miRNA:   3'- uGGCCUAGGCGUa-GUUG--------GCCCa---GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.