miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 217581 0.67 0.932419
Target:  5'- aGCCGG-UCCgGCGgcgCcGCCucggGGGUCGUCg -3'
miRNA:   3'- -UGGCCuAGG-CGUa--GuUGG----CCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 167456 0.67 0.932419
Target:  5'- uCCGGA---GCAUCGucuCCGaGGUCGUCg -3'
miRNA:   3'- uGGCCUaggCGUAGUu--GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 222186 0.69 0.84963
Target:  5'- cCCGGG-CCGCG---GCCGGcGUCGUCc -3'
miRNA:   3'- uGGCCUaGGCGUaguUGGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 215132 0.67 0.927374
Target:  5'- gGCCgGGGUCCGCG-CGACgGGGgaggCGa- -3'
miRNA:   3'- -UGG-CCUAGGCGUaGUUGgCCCa---GUag -5'
8982 5' -55.8 NC_002512.2 + 108938 0.68 0.910293
Target:  5'- aGCCGGuuaccgCCGCccuugcccgucggGUCGcCCGGGUcCGUCa -3'
miRNA:   3'- -UGGCCua----GGCG-------------UAGUuGGCCCA-GUAG- -5'
8982 5' -55.8 NC_002512.2 + 151884 0.68 0.916602
Target:  5'- cGCCGGcgAUCCGCGgaUCGuuuCCGGuaggcaugccGUCGUCg -3'
miRNA:   3'- -UGGCC--UAGGCGU--AGUu--GGCC----------CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 134088 0.66 0.964791
Target:  5'- uAUCGGAUCCGCGUCc-CCGGcGcCu-- -3'
miRNA:   3'- -UGGCCUAGGCGUAGuuGGCC-CaGuag -5'
8982 5' -55.8 NC_002512.2 + 102152 0.72 0.736123
Target:  5'- gGCCGcGA-CCGCG---GCUGGGUCGUCg -3'
miRNA:   3'- -UGGC-CUaGGCGUaguUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 73973 0.67 0.922101
Target:  5'- aGCUGGAggaCGCGUCGgcGCCGGacUCGUCc -3'
miRNA:   3'- -UGGCCUag-GCGUAGU--UGGCCc-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 7009 0.67 0.922101
Target:  5'- cGCaGGAgagCCGCAgggCcuuGCCGGGcUCGUCg -3'
miRNA:   3'- -UGgCCUa--GGCGUa--Gu--UGGCCC-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 72850 0.66 0.957995
Target:  5'- uGCCGGGUCCucGCu----CCGGGccgCGUCg -3'
miRNA:   3'- -UGGCCUAGG--CGuaguuGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 91182 0.66 0.961496
Target:  5'- uGCgGGAUCCGgGUCAGggagaccgccacCCGGGgcaCGUUc -3'
miRNA:   3'- -UGgCCUAGGCgUAGUU------------GGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 60740 0.66 0.961496
Target:  5'- aACCGcGA-CCGCggCGGCCGGG-CGg- -3'
miRNA:   3'- -UGGC-CUaGGCGuaGUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 110452 0.66 0.964791
Target:  5'- uGCCGGAUCauCAcCAGCaGGGcCGUCa -3'
miRNA:   3'- -UGGCCUAGgcGUaGUUGgCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 136168 0.66 0.964791
Target:  5'- cCCGucGAUCCGCcgCGcggcggggucGCCGGGaucgCGUCg -3'
miRNA:   3'- uGGC--CUAGGCGuaGU----------UGGCCCa---GUAG- -5'
8982 5' -55.8 NC_002512.2 + 77920 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 77998 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 49195 0.66 0.957995
Target:  5'- -gCGGAUCCaGUA-CAACCGGGcggCGUg -3'
miRNA:   3'- ugGCCUAGG-CGUaGUUGGCCCa--GUAg -5'
8982 5' -55.8 NC_002512.2 + 6353 0.7 0.814802
Target:  5'- gGCCGGcgggCCGCGggcgcgugccguucUCcGCCGuGGUCGUCg -3'
miRNA:   3'- -UGGCCua--GGCGU--------------AGuUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 95725 0.71 0.791413
Target:  5'- cGCCaGGGUCCGgGUCGAcggguacccguCCGGGUUgAUCg -3'
miRNA:   3'- -UGG-CCUAGGCgUAGUU-----------GGCCCAG-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.