Results 101 - 120 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8982 | 5' | -55.8 | NC_002512.2 | + | 77920 | 0.66 | 0.964791 |
Target: 5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3' miRNA: 3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 91182 | 0.66 | 0.961496 |
Target: 5'- uGCgGGAUCCGgGUCAGggagaccgccacCCGGGgcaCGUUc -3' miRNA: 3'- -UGgCCUAGGCgUAGUU------------GGCCCa--GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 136168 | 0.66 | 0.964791 |
Target: 5'- cCCGucGAUCCGCcgCGcggcggggucGCCGGGaucgCGUCg -3' miRNA: 3'- uGGC--CUAGGCGuaGU----------UGGCCCa---GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 134088 | 0.66 | 0.964791 |
Target: 5'- uAUCGGAUCCGCGUCc-CCGGcGcCu-- -3' miRNA: 3'- -UGGCCUAGGCGUAGuuGGCC-CaGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 110452 | 0.66 | 0.964791 |
Target: 5'- uGCCGGAUCauCAcCAGCaGGGcCGUCa -3' miRNA: 3'- -UGGCCUAGgcGUaGUUGgCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 76626 | 0.66 | 0.954281 |
Target: 5'- gACCaGGAcccgCCGCAUCGcAUCGGGUUu-- -3' miRNA: 3'- -UGG-CCUa---GGCGUAGU-UGGCCCAGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 82095 | 0.67 | 0.946628 |
Target: 5'- cCCGGAUCCGgAUCAuggucuugaggcacuCCaGGUCcUCg -3' miRNA: 3'- uGGCCUAGGCgUAGUu--------------GGcCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 54511 | 0.67 | 0.932419 |
Target: 5'- gGCCGuGAUgCCG-AUCgAACCGGGaCAUCc -3' miRNA: 3'- -UGGC-CUA-GGCgUAG-UUGGCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 135324 | 0.67 | 0.924237 |
Target: 5'- cCCGaGGUCgGCGUCAGCCGcgccggggugcugcuGGcCGUCg -3' miRNA: 3'- uGGC-CUAGgCGUAGUUGGC---------------CCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 53259 | 0.67 | 0.927374 |
Target: 5'- cACCGGAUCCGagccccCGACgGGGUgGa- -3' miRNA: 3'- -UGGCCUAGGCgua---GUUGgCCCAgUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 123648 | 0.67 | 0.927374 |
Target: 5'- cCCGGGUauauaacgCCGCggCGGCCGGGcUCGg- -3' miRNA: 3'- uGGCCUA--------GGCGuaGUUGGCCC-AGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 142280 | 0.67 | 0.927374 |
Target: 5'- gGCCGGGgaCgGCGUCGACgGGGgauccgacgCGUCc -3' miRNA: 3'- -UGGCCUa-GgCGUAGUUGgCCCa--------GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 152953 | 0.67 | 0.927374 |
Target: 5'- -gUGGAUCCGCG--AGCgGGGUCcUCu -3' miRNA: 3'- ugGCCUAGGCGUagUUGgCCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 34957 | 0.67 | 0.932419 |
Target: 5'- -gCGGAgCgGCcgCGACCGGGUCc-- -3' miRNA: 3'- ugGCCUaGgCGuaGUUGGCCCAGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 139246 | 0.67 | 0.932419 |
Target: 5'- gACCGcGG-CCGCGgc-GCCGGGUCGc- -3' miRNA: 3'- -UGGC-CUaGGCGUaguUGGCCCAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 104791 | 0.67 | 0.937239 |
Target: 5'- gGCgGGGUCCGCGcgCGG-CGGGUUGUa -3' miRNA: 3'- -UGgCCUAGGCGUa-GUUgGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 119594 | 0.67 | 0.941833 |
Target: 5'- cGCUGGAUgugCCGCAgcuggucCAggaaguacuccACCGGGUCGUa -3' miRNA: 3'- -UGGCCUA---GGCGUa------GU-----------UGGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 24680 | 0.67 | 0.941833 |
Target: 5'- cCCGGG-CCGC-UCGGgCGGGggucUCGUCg -3' miRNA: 3'- uGGCCUaGGCGuAGUUgGCCC----AGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 226195 | 0.67 | 0.946203 |
Target: 5'- gGCCGcg-CCGUuagcgcgCGGCCGGGcCAUCa -3' miRNA: 3'- -UGGCcuaGGCGua-----GUUGGCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 95836 | 0.67 | 0.946203 |
Target: 5'- cACCGGAcgCGCAgguugaaCAugGCCGGGUgGUCc -3' miRNA: 3'- -UGGCCUagGCGUa------GU--UGGCCCAgUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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