Results 21 - 40 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8982 | 5' | -55.8 | NC_002512.2 | + | 36381 | 0.66 | 0.957995 |
Target: 5'- cACCGuGAcgUUgGCG-CGACCGaGGUCGUCc -3' miRNA: 3'- -UGGC-CU--AGgCGUaGUUGGC-CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 72850 | 0.66 | 0.957995 |
Target: 5'- uGCCGGGUCCucGCu----CCGGGccgCGUCg -3' miRNA: 3'- -UGGCCUAGG--CGuaguuGGCCCa--GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 49195 | 0.66 | 0.957995 |
Target: 5'- -gCGGAUCCaGUA-CAACCGGGcggCGUg -3' miRNA: 3'- ugGCCUAGG-CGUaGUUGGCCCa--GUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 4202 | 0.66 | 0.954662 |
Target: 5'- cGCCGGAgaucggugggagcggCCGCGggGAgCGGGaCGUCg -3' miRNA: 3'- -UGGCCUa--------------GGCGUagUUgGCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 76626 | 0.66 | 0.954281 |
Target: 5'- gACCaGGAcccgCCGCAUCGcAUCGGGUUu-- -3' miRNA: 3'- -UGG-CCUa---GGCGUAGU-UGGCCCAGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 184660 | 0.66 | 0.954281 |
Target: 5'- cCCGGAUCCuuaucGUcUCGAUCGGGUgGgUCg -3' miRNA: 3'- uGGCCUAGG-----CGuAGUUGGCCCAgU-AG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 155139 | 0.66 | 0.954281 |
Target: 5'- cGCCGGGUCCcCGaaAACa-GGUCGUCg -3' miRNA: 3'- -UGGCCUAGGcGUagUUGgcCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 99116 | 0.66 | 0.954281 |
Target: 5'- gGCCGcuccaagaGAUCgCGCA-CGGCCGGaUCGUCg -3' miRNA: 3'- -UGGC--------CUAG-GCGUaGUUGGCCcAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 77122 | 0.66 | 0.954281 |
Target: 5'- cGCgGGGUCCGauccuuuUCGACCGGGcUCc-- -3' miRNA: 3'- -UGgCCUAGGCgu-----AGUUGGCCC-AGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 225592 | 0.66 | 0.950352 |
Target: 5'- cGCCGGGUCUuCGacCAGCUGGccGUCGUCg -3' miRNA: 3'- -UGGCCUAGGcGUa-GUUGGCC--CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 102347 | 0.66 | 0.950352 |
Target: 5'- aGCCGGGUCCggGCGUCggUCGuccGGagGUCc -3' miRNA: 3'- -UGGCCUAGG--CGUAGuuGGC---CCagUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 82095 | 0.67 | 0.946628 |
Target: 5'- cCCGGAUCCGgAUCAuggucuugaggcacuCCaGGUCcUCg -3' miRNA: 3'- uGGCCUAGGCgUAGUu--------------GGcCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 226195 | 0.67 | 0.946203 |
Target: 5'- gGCCGcg-CCGUuagcgcgCGGCCGGGcCAUCa -3' miRNA: 3'- -UGGCcuaGGCGua-----GUUGGCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 95836 | 0.67 | 0.946203 |
Target: 5'- cACCGGAcgCGCAgguugaaCAugGCCGGGUgGUCc -3' miRNA: 3'- -UGGCCUagGCGUa------GU--UGGCCCAgUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 145635 | 0.67 | 0.946203 |
Target: 5'- cCCGccuUCCGCGUCGagauGCCGGGcCcgCg -3' miRNA: 3'- uGGCcu-AGGCGUAGU----UGGCCCaGuaG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 195049 | 0.67 | 0.946203 |
Target: 5'- cGCCGcGGcCCGCGggCGGgaGGGUCGUCc -3' miRNA: 3'- -UGGC-CUaGGCGUa-GUUggCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 173297 | 0.67 | 0.943608 |
Target: 5'- cGCUGGAgggCCGuCAUCGGCUccaacgccgccugcgGGGUCuUCg -3' miRNA: 3'- -UGGCCUa--GGC-GUAGUUGG---------------CCCAGuAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 24680 | 0.67 | 0.941833 |
Target: 5'- cCCGGG-CCGC-UCGGgCGGGggucUCGUCg -3' miRNA: 3'- uGGCCUaGGCGuAGUUgGCCC----AGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 119594 | 0.67 | 0.941833 |
Target: 5'- cGCUGGAUgugCCGCAgcuggucCAggaaguacuccACCGGGUCGUa -3' miRNA: 3'- -UGGCCUA---GGCGUa------GU-----------UGGCCCAGUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 206717 | 0.67 | 0.941833 |
Target: 5'- cCCGG-UCCGUuUC-ACCGGGcUCAUg -3' miRNA: 3'- uGGCCuAGGCGuAGuUGGCCC-AGUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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