miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8983 3' -44.7 NC_002512.2 + 118916 0.67 0.999999
Target:  5'- gCUGUGGGaGAAGGgGGACGUGcugACg -3'
miRNA:   3'- -GACGCUUaUUUCUgUCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 161696 0.67 0.999999
Target:  5'- -cGCGug-GAAGAUggAGACGCGgccgGCg -3'
miRNA:   3'- gaCGCuuaUUUCUG--UCUGCGCaaa-UG- -5'
8983 3' -44.7 NC_002512.2 + 224180 0.67 0.999999
Target:  5'- -cGCGGAgagagAGAGACacacacacacGGACGCGgggACg -3'
miRNA:   3'- gaCGCUUa----UUUCUG----------UCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 4978 0.67 0.999999
Target:  5'- -cGCGAcgGAGGugAGACgGCGa---- -3'
miRNA:   3'- gaCGCUuaUUUCugUCUG-CGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 196298 0.67 0.999999
Target:  5'- aUGCGggUGAGGACccagcGGcCGCGg---- -3'
miRNA:   3'- gACGCuuAUUUCUG-----UCuGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 147483 0.68 0.999998
Target:  5'- -cGCGGGcgcUGcGGACGGGCGCGaccgGCg -3'
miRNA:   3'- gaCGCUU---AUuUCUGUCUGCGCaaa-UG- -5'
8983 3' -44.7 NC_002512.2 + 227610 0.68 0.999998
Target:  5'- -aGCGGccgGAGGGCGGGCgGCGgcgGCg -3'
miRNA:   3'- gaCGCUua-UUUCUGUCUG-CGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 163069 0.68 0.999998
Target:  5'- gUGCGAGUGGAaACGGugGCa----- -3'
miRNA:   3'- gACGCUUAUUUcUGUCugCGcaaaug -5'
8983 3' -44.7 NC_002512.2 + 75549 0.68 0.999998
Target:  5'- -cGUGGcgGAGGACGacGACGCGg--ACg -3'
miRNA:   3'- gaCGCUuaUUUCUGU--CUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 97382 0.68 0.999997
Target:  5'- -gGCGGccGGAGACGGGgGCGg--GCg -3'
miRNA:   3'- gaCGCUuaUUUCUGUCUgCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 157006 0.68 0.999996
Target:  5'- gCUGCGGAgcagcguGAGuaAGACGCGgagUUGCu -3'
miRNA:   3'- -GACGCUUau-----UUCugUCUGCGCa--AAUG- -5'
8983 3' -44.7 NC_002512.2 + 131283 0.68 0.999996
Target:  5'- cCUGCGGA---AGAgAGACGCGc---- -3'
miRNA:   3'- -GACGCUUauuUCUgUCUGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 196830 0.68 0.999994
Target:  5'- uCUGCGAcgGGcugcggcGGAUGGACGcCGUcUACg -3'
miRNA:   3'- -GACGCUuaUU-------UCUGUCUGC-GCAaAUG- -5'
8983 3' -44.7 NC_002512.2 + 192007 0.68 0.999992
Target:  5'- gCUGCGGAaGAccguccuGGCGGGCGCGggaGCg -3'
miRNA:   3'- -GACGCUUaUUu------CUGUCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 89383 0.69 0.999989
Target:  5'- aCUGCGAGUAGuuGCcGAUGCGg--GCc -3'
miRNA:   3'- -GACGCUUAUUucUGuCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 98754 0.69 0.999985
Target:  5'- -cGCGggUugacGAAGACGGGCGCc----- -3'
miRNA:   3'- gaCGCuuA----UUUCUGUCUGCGcaaaug -5'
8983 3' -44.7 NC_002512.2 + 88683 0.69 0.999972
Target:  5'- gUGUGggUAucG-CGGACGCGgg-ACg -3'
miRNA:   3'- gACGCuuAUuuCuGUCUGCGCaaaUG- -5'
8983 3' -44.7 NC_002512.2 + 52808 0.69 0.999972
Target:  5'- -aGCGGGggcuGACGGACGCGg---- -3'
miRNA:   3'- gaCGCUUauuuCUGUCUGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 55110 0.7 0.999932
Target:  5'- cCUGgaCGAGUucgcGGAGACGGACGCGg---- -3'
miRNA:   3'- -GAC--GCUUA----UUUCUGUCUGCGCaaaug -5'
8983 3' -44.7 NC_002512.2 + 57507 0.7 0.999919
Target:  5'- gUGCaGGUAGAGACAGgagagguugcgggacACGCGUUccaUACa -3'
miRNA:   3'- gACGcUUAUUUCUGUC---------------UGCGCAA---AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.