miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 3' -56.9 NC_002512.2 + 121335 0.66 0.936441
Target:  5'- -gGUGaccUCGCUCCGgCggCGGGGcCGUUGg -3'
miRNA:   3'- agUACa--AGUGAGGCgG--GCCCC-GCAAC- -5'
8984 3' -56.9 NC_002512.2 + 124014 0.66 0.931622
Target:  5'- gCGUGUUCGCgCUGCCCcuGGGCc--- -3'
miRNA:   3'- aGUACAAGUGaGGCGGGc-CCCGcaac -5'
8984 3' -56.9 NC_002512.2 + 123677 0.66 0.931622
Target:  5'- cUCggGgaagCGgUCCGUCgcggCGGGGCGUUGg -3'
miRNA:   3'- -AGuaCaa--GUgAGGCGG----GCCCCGCAAC- -5'
8984 3' -56.9 NC_002512.2 + 49454 0.66 0.931622
Target:  5'- -------gGCgCCGCCCGGGGCGc-- -3'
miRNA:   3'- aguacaagUGaGGCGGGCCCCGCaac -5'
8984 3' -56.9 NC_002512.2 + 215403 0.66 0.92658
Target:  5'- cCAUGUUCGCcCUGCCCuggcccaaGGGCGc-- -3'
miRNA:   3'- aGUACAAGUGaGGCGGGc-------CCCGCaac -5'
8984 3' -56.9 NC_002512.2 + 147924 0.66 0.921315
Target:  5'- ------cCAC-CCGCCCGGGGCu--- -3'
miRNA:   3'- aguacaaGUGaGGCGGGCCCCGcaac -5'
8984 3' -56.9 NC_002512.2 + 137192 0.67 0.915826
Target:  5'- gCGUcgUCGgUCCGCCCGguGGGCGg-- -3'
miRNA:   3'- aGUAcaAGUgAGGCGGGC--CCCGCaac -5'
8984 3' -56.9 NC_002512.2 + 117964 0.67 0.906584
Target:  5'- gCGUGgaCGCUCCccgccuggccgugcuGCUCGGGGUGcUGg -3'
miRNA:   3'- aGUACaaGUGAGG---------------CGGGCCCCGCaAC- -5'
8984 3' -56.9 NC_002512.2 + 108926 0.67 0.898037
Target:  5'- gUCcUGUUCAUgaUCUGCCUGGcGGUGUc- -3'
miRNA:   3'- -AGuACAAGUG--AGGCGGGCC-CCGCAac -5'
8984 3' -56.9 NC_002512.2 + 123428 0.67 0.891672
Target:  5'- uUCGUGUUCGCgaUCC-CCCGacaGGCGUUc -3'
miRNA:   3'- -AGUACAAGUG--AGGcGGGCc--CCGCAAc -5'
8984 3' -56.9 NC_002512.2 + 21222 0.68 0.878308
Target:  5'- cCcgGg--ACgCCGCCCGGGGCGg-- -3'
miRNA:   3'- aGuaCaagUGaGGCGGGCCCCGCaac -5'
8984 3' -56.9 NC_002512.2 + 5490 0.68 0.849163
Target:  5'- cUCGUGgcgCGCgUCCGCgCCGGGGUc--- -3'
miRNA:   3'- -AGUACaa-GUG-AGGCG-GGCCCCGcaac -5'
8984 3' -56.9 NC_002512.2 + 126477 0.69 0.833466
Target:  5'- gUCGUcgUCGCgUCGCCCGGauccccGGCGUUGg -3'
miRNA:   3'- -AGUAcaAGUGaGGCGGGCC------CCGCAAC- -5'
8984 3' -56.9 NC_002512.2 + 73842 0.69 0.828621
Target:  5'- cCGUGUUCACgugaucaaagaCCGCCCGGGaucacacaacgaccuGgGUUGg -3'
miRNA:   3'- aGUACAAGUGa----------GGCGGGCCC---------------CgCAAC- -5'
8984 3' -56.9 NC_002512.2 + 122032 0.7 0.782503
Target:  5'- aUCGgcgcUCGCgcaCGCCCGGGGCGg-- -3'
miRNA:   3'- -AGUaca-AGUGag-GCGGGCCCCGCaac -5'
8984 3' -56.9 NC_002512.2 + 107155 0.7 0.755217
Target:  5'- aUCAg---CGCguuUCCGCCCGggaGGGCGUUGa -3'
miRNA:   3'- -AGUacaaGUG---AGGCGGGC---CCCGCAAC- -5'
8984 3' -56.9 NC_002512.2 + 77337 0.71 0.727019
Target:  5'- -------gGCUCCuGaCCCGGGGCGUUGa -3'
miRNA:   3'- aguacaagUGAGG-C-GGGCCCCGCAAC- -5'
8984 3' -56.9 NC_002512.2 + 206304 0.71 0.698133
Target:  5'- cUCGUGUUCGCUCuCGCCCaGcGGCc--- -3'
miRNA:   3'- -AGUACAAGUGAG-GCGGGcC-CCGcaac -5'
8984 3' -56.9 NC_002512.2 + 99533 0.73 0.589829
Target:  5'- -gGUGagCGgUCCGCCCGGGGuCGUg- -3'
miRNA:   3'- agUACaaGUgAGGCGGGCCCC-GCAac -5'
8984 3' -56.9 NC_002512.2 + 191440 1.09 0.003797
Target:  5'- gUCAUGUUCACUCCGCCCGGGGCGUUGa -3'
miRNA:   3'- -AGUACAAGUGAGGCGGGCCCCGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.