miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 28262 0.67 0.628218
Target:  5'- gUACGAcGGCGCCuaccgcuCGGCGCuGGCGGa -3'
miRNA:   3'- -AUGCU-CCGCGGccu----GUCGCG-CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 72931 0.67 0.628218
Target:  5'- gACGucGGCgaacgGCCGGGCcaccAGgGUGGCGACc -3'
miRNA:   3'- aUGCu-CCG-----CGGCCUG----UCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 108590 0.67 0.628218
Target:  5'- cGgGGGGCcCCGGGgAGCGgCGGCcGCg -3'
miRNA:   3'- aUgCUCCGcGGCCUgUCGC-GCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 131613 0.67 0.628218
Target:  5'- gACGGGGa--CGaGCGGCGCGGgGGCa -3'
miRNA:   3'- aUGCUCCgcgGCcUGUCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 83467 0.67 0.628218
Target:  5'- gUGCGGGGCGgCGcGCAGCuucGgGGgGACg -3'
miRNA:   3'- -AUGCUCCGCgGCcUGUCG---CgCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 7563 0.67 0.638753
Target:  5'- --gGAGGCGCCGccGCAGCcuccgguaccgccucCGGCGGCa -3'
miRNA:   3'- augCUCCGCGGCc-UGUCGc--------------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 72800 0.67 0.637796
Target:  5'- gACGGGccCGCC-GugGGCGcCGGCGACc -3'
miRNA:   3'- aUGCUCc-GCGGcCugUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 9017 0.67 0.637796
Target:  5'- --gGAGaGCGCCGaGGCccCGCGGaCGACg -3'
miRNA:   3'- augCUC-CGCGGC-CUGucGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 24232 0.67 0.618643
Target:  5'- -cCGAGGCGUCGGGCccgcCGaCGGCGuCc -3'
miRNA:   3'- auGCUCCGCGGCCUGuc--GC-GCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 38914 0.67 0.618643
Target:  5'- gGCGAcGGC-CCGGAgGGgccgcCGCGGCGGg -3'
miRNA:   3'- aUGCU-CCGcGGCCUgUC-----GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 58192 0.67 0.628218
Target:  5'- -uCGAGaCGCUGGugAGUGgGcGCGGCg -3'
miRNA:   3'- auGCUCcGCGGCCugUCGCgC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 130247 0.67 0.618643
Target:  5'- gGCucGGGCGCCGGGCccucCGagGGCGACg -3'
miRNA:   3'- aUGc-UCCGCGGCCUGuc--GCg-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 132901 0.67 0.618643
Target:  5'- cUGCGuGGCGuCCaGGuACAgGUGCGGCGuCa -3'
miRNA:   3'- -AUGCuCCGC-GG-CC-UGU-CGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 140946 0.67 0.62726
Target:  5'- gACGAGGCGgaaggggggcggcUCGGuC-GCGUGGUGACc -3'
miRNA:   3'- aUGCUCCGC-------------GGCCuGuCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 45471 0.67 0.62726
Target:  5'- -cCGAGGCGaCGGAgaaGGCcgagcgccccccgGCGGCGGCc -3'
miRNA:   3'- auGCUCCGCgGCCUg--UCG-------------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 123698 0.67 0.609076
Target:  5'- gGCGGGGCGuuGGcGCAGCGguuccgGGUGGa -3'
miRNA:   3'- aUGCUCCGCggCC-UGUCGCg-----CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 73 0.67 0.656933
Target:  5'- cGCG-GGCGCgaGGA-GGCGagaGGCGGCg -3'
miRNA:   3'- aUGCuCCGCGg-CCUgUCGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 108328 0.67 0.64737
Target:  5'- cGCGcGGCgGgCGGuCGGCGCGGCa-- -3'
miRNA:   3'- aUGCuCCG-CgGCCuGUCGCGCCGcug -5'
8984 5' -62.9 NC_002512.2 + 7224 0.67 0.618643
Target:  5'- -uCGAGGCGCCccucggcccGGcCGGCcgucGCGGCGGa -3'
miRNA:   3'- auGCUCCGCGG---------CCuGUCG----CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 8364 0.67 0.637796
Target:  5'- gGCGGGaGCGCCGaGGaucCGCGGCGcCg -3'
miRNA:   3'- aUGCUC-CGCGGC-CUgucGCGCCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.