miRNA display CGI


Results 121 - 140 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 140522 0.67 0.637796
Target:  5'- cACGuacGGCGCCaGGACGGCcGCcuCGACg -3'
miRNA:   3'- aUGCu--CCGCGG-CCUGUCG-CGccGCUG- -5'
8984 5' -62.9 NC_002512.2 + 149364 0.67 0.64737
Target:  5'- gACGGGG-GagaGGACgagGGCGCGGgGACg -3'
miRNA:   3'- aUGCUCCgCgg-CCUG---UCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 221037 0.67 0.64737
Target:  5'- aACGGGGUGCCGcccGGCAGCgagcccgucugGCccaagcuccGGCGGCg -3'
miRNA:   3'- aUGCUCCGCGGC---CUGUCG-----------CG---------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 144610 0.67 0.64737
Target:  5'- cACGAGguccGCGCCGcGCuGGaCGUGGCGGCc -3'
miRNA:   3'- aUGCUC----CGCGGCcUG-UC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 193433 0.67 0.64737
Target:  5'- cUACGAGcGCGaCCGcGGCcGC-CGGUGGCg -3'
miRNA:   3'- -AUGCUC-CGC-GGC-CUGuCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 210961 0.67 0.651197
Target:  5'- aACGAGGuCGuCCGGGCccugugucgcgccuGCGUGGCcGCg -3'
miRNA:   3'- aUGCUCC-GC-GGCCUGu-------------CGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 112148 0.67 0.656933
Target:  5'- gACGAGGCGgUcGACGGCGagcCGGCG-Cu -3'
miRNA:   3'- aUGCUCCGCgGcCUGUCGC---GCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 164430 0.67 0.656933
Target:  5'- cAUGcAGGuCGCCGGGaagccgcuCGGCGCccucggcgggGGCGACg -3'
miRNA:   3'- aUGC-UCC-GCGGCCU--------GUCGCG----------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 229477 0.67 0.656933
Target:  5'- cGCG-GGCGCgaGGA-GGCGagaGGCGGCg -3'
miRNA:   3'- aUGCuCCGCGg-CCUgUCGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 72931 0.67 0.628218
Target:  5'- gACGucGGCgaacgGCCGGGCcaccAGgGUGGCGACc -3'
miRNA:   3'- aUGCu-CCG-----CGGCCUG----UCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 108408 0.67 0.637796
Target:  5'- -gUGGGGgGgaGGACGGgGaCGGCGGCg -3'
miRNA:   3'- auGCUCCgCggCCUGUCgC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 224073 0.68 0.599525
Target:  5'- -uCGAcGcCGCCGaACGGgGCGGCGGCg -3'
miRNA:   3'- auGCUcC-GCGGCcUGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 147481 0.68 0.589995
Target:  5'- cGCGcGGGCGCugCGGACgGGCGCGacCGGCg -3'
miRNA:   3'- aUGC-UCCGCG--GCCUG-UCGCGCc-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 126315 0.68 0.590947
Target:  5'- cUGCGAGGCGucgucuccccacgaCCGcuuucggcugguggaGACGGC-CGGCGGCa -3'
miRNA:   3'- -AUGCUCCGC--------------GGC---------------CUGUCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 72257 0.68 0.598571
Target:  5'- -cCGcAGGUGCaGGaagcccuucuucaGCGGCGUGGCGGCg -3'
miRNA:   3'- auGC-UCCGCGgCC-------------UGUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 82360 0.68 0.598571
Target:  5'- gUGCgGGGGCGgCGGAgGGUgaugcugcggccgGCGGUGGCu -3'
miRNA:   3'- -AUG-CUCCGCgGCCUgUCG-------------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 67548 0.68 0.599525
Target:  5'- gACGAGGuCGgUGGACAGCGCcauGCaGAUc -3'
miRNA:   3'- aUGCUCC-GCgGCCUGUCGCGc--CG-CUG- -5'
8984 5' -62.9 NC_002512.2 + 228300 0.68 0.599525
Target:  5'- gGCGA-GCGCCGGAgaAGCaGCGGacauCGACu -3'
miRNA:   3'- aUGCUcCGCGGCCUg-UCG-CGCC----GCUG- -5'
8984 5' -62.9 NC_002512.2 + 23114 0.68 0.599525
Target:  5'- gAUGAucGCGCUGGACGaccccauguuccGCGCGgGCGGCa -3'
miRNA:   3'- aUGCUc-CGCGGCCUGU------------CGCGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 78392 0.68 0.599525
Target:  5'- cGCGAGGCcgGCUGGAgaucgagAGCGCGGgaUGACu -3'
miRNA:   3'- aUGCUCCG--CGGCCUg------UCGCGCC--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.