Results 81 - 100 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8984 | 5' | -62.9 | NC_002512.2 | + | 204732 | 0.72 | 0.356887 |
Target: 5'- gGCGGGGgGCCGGACccgGGUGCucaGCGAUc -3' miRNA: 3'- aUGCUCCgCGGCCUG---UCGCGc--CGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 155630 | 0.72 | 0.364332 |
Target: 5'- gUGCGAGGagaGCCGG-CGGCGCuucGGCGuCc -3' miRNA: 3'- -AUGCUCCg--CGGCCuGUCGCG---CCGCuG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 99266 | 0.72 | 0.379541 |
Target: 5'- -cCGAGGaCGCCGGAC-GCGgGGuCGAg -3' miRNA: 3'- auGCUCC-GCGGCCUGuCGCgCC-GCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 12384 | 0.71 | 0.387304 |
Target: 5'- -cCGAGcuCGCCuucGGGCGGCgGCGGCGGCg -3' miRNA: 3'- auGCUCc-GCGG---CCUGUCG-CGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 124861 | 0.71 | 0.403139 |
Target: 5'- gACGAGGaC-CCGGACGagaaccGgGCGGCGGCc -3' miRNA: 3'- aUGCUCC-GcGGCCUGU------CgCGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 87836 | 0.71 | 0.395171 |
Target: 5'- gGCcGGGCGUCGGGCccuCGCGGCGGg -3' miRNA: 3'- aUGcUCCGCGGCCUGuc-GCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 156521 | 0.71 | 0.403139 |
Target: 5'- gGCGGGGCGCgGG--GGUcCGGCGGCg -3' miRNA: 3'- aUGCUCCGCGgCCugUCGcGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 225785 | 0.71 | 0.402338 |
Target: 5'- -cCGAGGCugcgccgGCCGGGCcGCG-GGCGGCc -3' miRNA: 3'- auGCUCCG-------CGGCCUGuCGCgCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 158934 | 0.71 | 0.398346 |
Target: 5'- gGCgGGGGCGCCGG-CGGCcucucggucagcaaCGGCGGCg -3' miRNA: 3'- aUG-CUCCGCGGCCuGUCGc-------------GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 157079 | 0.71 | 0.395171 |
Target: 5'- -cCGGGGuCGCCGGcgcccACGGCGggcccguccCGGCGACg -3' miRNA: 3'- auGCUCC-GCGGCC-----UGUCGC---------GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 95792 | 0.71 | 0.411209 |
Target: 5'- aGCGguAGGCGCCGG--GGCGCGGauccgauaGACg -3' miRNA: 3'- aUGC--UCCGCGGCCugUCGCGCCg-------CUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 111231 | 0.71 | 0.411209 |
Target: 5'- gACG-GGCgGCCGGGCgcccggAGCGUcgGGCGGCa -3' miRNA: 3'- aUGCuCCG-CGGCCUG------UCGCG--CCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 81947 | 0.71 | 0.411209 |
Target: 5'- gGCgGAGGgGCCGG-C-GCGCGGUGAg -3' miRNA: 3'- aUG-CUCCgCGGCCuGuCGCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 83798 | 0.71 | 0.411209 |
Target: 5'- -cCGAGgaccGCGUCGGGC-GCGcCGGCGGCg -3' miRNA: 3'- auGCUC----CGCGGCCUGuCGC-GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 122790 | 0.71 | 0.419379 |
Target: 5'- -cCGAgGGCGCCGGGCccuG-GCGGCGGg -3' miRNA: 3'- auGCU-CCGCGGCCUGu--CgCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 136186 | 0.71 | 0.426815 |
Target: 5'- gGCGGGGuCGCCGGGaucGCGUcgacgccGGCGGCc -3' miRNA: 3'- aUGCUCC-GCGGCCUgu-CGCG-------CCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 6443 | 0.71 | 0.427646 |
Target: 5'- gGCG-GGCGCCGaGACAGgGguCGGcCGGCa -3' miRNA: 3'- aUGCuCCGCGGC-CUGUCgC--GCC-GCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 65445 | 0.71 | 0.427646 |
Target: 5'- -cCGAgGGCGCCGaGCGGCuuccCGGCGACc -3' miRNA: 3'- auGCU-CCGCGGCcUGUCGc---GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 82407 | 0.71 | 0.427646 |
Target: 5'- cGCGGGGgaGCCGGugGuccCGCGGCGGa -3' miRNA: 3'- aUGCUCCg-CGGCCugUc--GCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 185499 | 0.71 | 0.419379 |
Target: 5'- gGCGca-CGCCGGGCuGCGCGGgGGCc -3' miRNA: 3'- aUGCuccGCGGCCUGuCGCGCCgCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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