miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 225785 0.71 0.402338
Target:  5'- -cCGAGGCugcgccgGCCGGGCcGCG-GGCGGCc -3'
miRNA:   3'- auGCUCCG-------CGGCCUGuCGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 124861 0.71 0.403139
Target:  5'- gACGAGGaC-CCGGACGagaaccGgGCGGCGGCc -3'
miRNA:   3'- aUGCUCC-GcGGCCUGU------CgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 156521 0.71 0.403139
Target:  5'- gGCGGGGCGCgGG--GGUcCGGCGGCg -3'
miRNA:   3'- aUGCUCCGCGgCCugUCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 222315 0.71 0.403139
Target:  5'- --gGAGGCGguaCCGGA-GGCuGCGGCGGCg -3'
miRNA:   3'- augCUCCGC---GGCCUgUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 95792 0.71 0.411209
Target:  5'- aGCGguAGGCGCCGG--GGCGCGGauccgauaGACg -3'
miRNA:   3'- aUGC--UCCGCGGCCugUCGCGCCg-------CUG- -5'
8984 5' -62.9 NC_002512.2 + 111231 0.71 0.411209
Target:  5'- gACG-GGCgGCCGGGCgcccggAGCGUcgGGCGGCa -3'
miRNA:   3'- aUGCuCCG-CGGCCUG------UCGCG--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 185499 0.71 0.419379
Target:  5'- gGCGca-CGCCGGGCuGCGCGGgGGCc -3'
miRNA:   3'- aUGCuccGCGGCCUGuCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 124273 0.71 0.395171
Target:  5'- gACGGcGGCGUCGGACccGgGCGuGCGGCu -3'
miRNA:   3'- aUGCU-CCGCGGCCUGu-CgCGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 127248 0.71 0.387304
Target:  5'- -cCGAGGCgacgGCCGGaACGGCGaCGGCGu- -3'
miRNA:   3'- auGCUCCG----CGGCC-UGUCGC-GCCGCug -5'
8984 5' -62.9 NC_002512.2 + 136186 0.71 0.426815
Target:  5'- gGCGGGGuCGCCGGGaucGCGUcgacgccGGCGGCc -3'
miRNA:   3'- aUGCUCC-GCGGCCUgu-CGCG-------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 224955 0.71 0.408778
Target:  5'- cGCucGGCuccgccgucuacccGCUGGGCGGCgGCGGCGGCg -3'
miRNA:   3'- aUGcuCCG--------------CGGCCUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 87836 0.71 0.395171
Target:  5'- gGCcGGGCGUCGGGCccuCGCGGCGGg -3'
miRNA:   3'- aUGcUCCGCGGCCUGuc-GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 82407 0.71 0.427646
Target:  5'- cGCGGGGgaGCCGGugGuccCGCGGCGGa -3'
miRNA:   3'- aUGCUCCg-CGGCCugUc--GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 6443 0.71 0.427646
Target:  5'- gGCG-GGCGCCGaGACAGgGguCGGcCGGCa -3'
miRNA:   3'- aUGCuCCGCGGC-CUGUCgC--GCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 65445 0.71 0.427646
Target:  5'- -cCGAgGGCGCCGaGCGGCuuccCGGCGACc -3'
miRNA:   3'- auGCU-CCGCGGCcUGUCGc---GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 160902 0.71 0.384964
Target:  5'- aGCGGGGCgGCCggggcaagggacgcGGACAGuCGCuGCGGCg -3'
miRNA:   3'- aUGCUCCG-CGG--------------CCUGUC-GCGcCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 133876 0.71 0.387304
Target:  5'- gUACGGGGCguuccGCCuGGCGGuCGCGGCGcCg -3'
miRNA:   3'- -AUGCUCCG-----CGGcCUGUC-GCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 195005 0.71 0.419379
Target:  5'- gGCGAcGGCGgucCCGGcgGCGGCGacgaCGGCGACg -3'
miRNA:   3'- aUGCU-CCGC---GGCC--UGUCGC----GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 17041 0.7 0.467745
Target:  5'- --gGAGGgGaCGGACGGCGCccgcgcccaaccccGGCGGCg -3'
miRNA:   3'- augCUCCgCgGCCUGUCGCG--------------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 89420 0.7 0.461648
Target:  5'- cGCGAGGCGgCGuGACGGagaGGUGGCg -3'
miRNA:   3'- aUGCUCCGCgGC-CUGUCgcgCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.