miRNA display CGI


Results 61 - 80 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 3057 0.72 0.335199
Target:  5'- -uUGAcGGCGgCGGACgcGGCgGCGGCGGCg -3'
miRNA:   3'- auGCU-CCGCgGCCUG--UCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 100227 0.72 0.335199
Target:  5'- -uCGAGGCGgCGucGACGG-GCGGCGACc -3'
miRNA:   3'- auGCUCCGCgGC--CUGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 228030 0.72 0.335199
Target:  5'- --aGGGGCGaCCGGACGGCggcgagacgcccGCGGaCGGCu -3'
miRNA:   3'- augCUCCGC-GGCCUGUCG------------CGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 103327 0.72 0.341603
Target:  5'- -cCGAGGC-CCGGGCGGCGUagcccggGGCgGACg -3'
miRNA:   3'- auGCUCCGcGGCCUGUCGCG-------CCG-CUG- -5'
8984 5' -62.9 NC_002512.2 + 135205 0.72 0.34232
Target:  5'- cACGAGggcagcugcGCGCCGGAgAGCGUGccgaccGCGACg -3'
miRNA:   3'- aUGCUC---------CGCGGCCUgUCGCGC------CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 113267 0.72 0.34232
Target:  5'- aGgGGGGCgGCCGGcgggGCAGcCGCGGCGGg -3'
miRNA:   3'- aUgCUCCG-CGGCC----UGUC-GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 76023 0.72 0.34232
Target:  5'- -gUGAGGCGCC-GACGaCGCGGaCGACg -3'
miRNA:   3'- auGCUCCGCGGcCUGUcGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 207601 0.72 0.349549
Target:  5'- cUGCGAcGGCGgCGG-CuGCuGCGGCGGCg -3'
miRNA:   3'- -AUGCU-CCGCgGCCuGuCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 9746 0.72 0.356887
Target:  5'- cUugGGGGCggcggaGCCGGACccgccgccccGCGUGGCGGCu -3'
miRNA:   3'- -AugCUCCG------CGGCCUGu---------CGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 204732 0.72 0.356887
Target:  5'- gGCGGGGgGCCGGACccgGGUGCucaGCGAUc -3'
miRNA:   3'- aUGCUCCgCGGCCUG---UCGCGc--CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 32724 0.72 0.356887
Target:  5'- --aGAGGCGCgGGuggaagACGGcCGUGGCGACc -3'
miRNA:   3'- augCUCCGCGgCC------UGUC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 150329 0.72 0.364332
Target:  5'- gGCGAGGaCGCCGcGGCGGUGauggaGuGCGACc -3'
miRNA:   3'- aUGCUCC-GCGGC-CUGUCGCg----C-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 155630 0.72 0.364332
Target:  5'- gUGCGAGGagaGCCGG-CGGCGCuucGGCGuCc -3'
miRNA:   3'- -AUGCUCCg--CGGCCuGUCGCG---CCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 10543 0.72 0.364332
Target:  5'- -uCGcGGaCGCCGGGCAGC-CGGCGGg -3'
miRNA:   3'- auGCuCC-GCGGCCUGUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 121839 0.72 0.371124
Target:  5'- gACGGGGgGgaGGACGGCGgggaggaCGGCGGCg -3'
miRNA:   3'- aUGCUCCgCggCCUGUCGC-------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 148105 0.72 0.371124
Target:  5'- gGCGGcGGCGCCGaagacgaGGCGGCGgUGGUGACc -3'
miRNA:   3'- aUGCU-CCGCGGC-------CUGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 44543 0.72 0.371884
Target:  5'- gGCGAuGGCGgCGGcCAcccGgGCGGCGACg -3'
miRNA:   3'- aUGCU-CCGCgGCCuGU---CgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 152765 0.72 0.377233
Target:  5'- gGCGAGGUcucuaucgaugaccGCCGGGCcuccgucucggaGGUccGCGGCGACg -3'
miRNA:   3'- aUGCUCCG--------------CGGCCUG------------UCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 91303 0.72 0.378771
Target:  5'- aAgGAGGUGUCGG-CGGCGCagagggagcucacGGCGGCg -3'
miRNA:   3'- aUgCUCCGCGGCCuGUCGCG-------------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 66214 0.72 0.379541
Target:  5'- gGCGAGGaCGuccCCGGcCAGCuugGCGGUGACg -3'
miRNA:   3'- aUGCUCC-GC---GGCCuGUCG---CGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.