miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 66214 0.72 0.379541
Target:  5'- gGCGAGGaCGuccCCGGcCAGCuugGCGGUGACg -3'
miRNA:   3'- aUGCUCC-GC---GGCCuGUCG---CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 29009 0.72 0.379541
Target:  5'- aACGAcGUGgUGGGCGGCGUGGuCGACg -3'
miRNA:   3'- aUGCUcCGCgGCCUGUCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 99266 0.72 0.379541
Target:  5'- -cCGAGGaCGCCGGAC-GCGgGGuCGAg -3'
miRNA:   3'- auGCUCC-GCGGCCUGuCGCgCC-GCUg -5'
8984 5' -62.9 NC_002512.2 + 160902 0.71 0.384964
Target:  5'- aGCGGGGCgGCCggggcaagggacgcGGACAGuCGCuGCGGCg -3'
miRNA:   3'- aUGCUCCG-CGG--------------CCUGUC-GCGcCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 14497 0.71 0.387304
Target:  5'- gGCGAacauGGUGCCGGGgcUGGCGaCGGCGAa -3'
miRNA:   3'- aUGCU----CCGCGGCCU--GUCGC-GCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 12384 0.71 0.387304
Target:  5'- -cCGAGcuCGCCuucGGGCGGCgGCGGCGGCg -3'
miRNA:   3'- auGCUCc-GCGG---CCUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 127248 0.71 0.387304
Target:  5'- -cCGAGGCgacgGCCGGaACGGCGaCGGCGu- -3'
miRNA:   3'- auGCUCCG----CGGCC-UGUCGC-GCCGCug -5'
8984 5' -62.9 NC_002512.2 + 133876 0.71 0.387304
Target:  5'- gUACGGGGCguuccGCCuGGCGGuCGCGGCGcCg -3'
miRNA:   3'- -AUGCUCCG-----CGGcCUGUC-GCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 87836 0.71 0.395171
Target:  5'- gGCcGGGCGUCGGGCccuCGCGGCGGg -3'
miRNA:   3'- aUGcUCCGCGGCCUGuc-GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 157079 0.71 0.395171
Target:  5'- -cCGGGGuCGCCGGcgcccACGGCGggcccguccCGGCGACg -3'
miRNA:   3'- auGCUCC-GCGGCC-----UGUCGC---------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 124273 0.71 0.395171
Target:  5'- gACGGcGGCGUCGGACccGgGCGuGCGGCu -3'
miRNA:   3'- aUGCU-CCGCGGCCUGu-CgCGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 158934 0.71 0.398346
Target:  5'- gGCgGGGGCGCCGG-CGGCcucucggucagcaaCGGCGGCg -3'
miRNA:   3'- aUG-CUCCGCGGCCuGUCGc-------------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 225785 0.71 0.402338
Target:  5'- -cCGAGGCugcgccgGCCGGGCcGCG-GGCGGCc -3'
miRNA:   3'- auGCUCCG-------CGGCCUGuCGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 156521 0.71 0.403139
Target:  5'- gGCGGGGCGCgGG--GGUcCGGCGGCg -3'
miRNA:   3'- aUGCUCCGCGgCCugUCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 124625 0.71 0.403139
Target:  5'- gGCGucGGCGCCuGGauccgggugcGCGGCGCGGCG-Cu -3'
miRNA:   3'- aUGCu-CCGCGG-CC----------UGUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 21064 0.71 0.403139
Target:  5'- cGCGugaGGGCGCaCGGGCGGCggucccgcuccGgGGCGACc -3'
miRNA:   3'- aUGC---UCCGCG-GCCUGUCG-----------CgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 191024 0.71 0.403139
Target:  5'- -cCGAGGUGCCugcgaGGCggGGCGCGGCGcACg -3'
miRNA:   3'- auGCUCCGCGGc----CUG--UCGCGCCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 222315 0.71 0.403139
Target:  5'- --gGAGGCGguaCCGGA-GGCuGCGGCGGCg -3'
miRNA:   3'- augCUCCGC---GGCCUgUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 6333 0.71 0.403139
Target:  5'- cGCGGGGgGaCCGGGC-GCGgGGcCGGCg -3'
miRNA:   3'- aUGCUCCgC-GGCCUGuCGCgCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 124861 0.71 0.403139
Target:  5'- gACGAGGaC-CCGGACGagaaccGgGCGGCGGCc -3'
miRNA:   3'- aUGCUCC-GcGGCCUGU------CgCGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.