miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 153950 0.71 0.406355
Target:  5'- -uCGGGGaCGUCGGguucuucgggguccgGCGGCGcCGGCGGCg -3'
miRNA:   3'- auGCUCC-GCGGCC---------------UGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 224955 0.71 0.408778
Target:  5'- cGCucGGCuccgccgucuacccGCUGGGCGGCgGCGGCGGCg -3'
miRNA:   3'- aUGcuCCG--------------CGGCCUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 95792 0.71 0.411209
Target:  5'- aGCGguAGGCGCCGG--GGCGCGGauccgauaGACg -3'
miRNA:   3'- aUGC--UCCGCGGCCugUCGCGCCg-------CUG- -5'
8984 5' -62.9 NC_002512.2 + 22986 0.71 0.411209
Target:  5'- gGCGGGaCG-CGGGCGGCGCuGGUGACc -3'
miRNA:   3'- aUGCUCcGCgGCCUGUCGCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 81947 0.71 0.411209
Target:  5'- gGCgGAGGgGCCGG-C-GCGCGGUGAg -3'
miRNA:   3'- aUG-CUCCgCGGCCuGuCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 83798 0.71 0.411209
Target:  5'- -cCGAGgaccGCGUCGGGC-GCGcCGGCGGCg -3'
miRNA:   3'- auGCUC----CGCGGCCUGuCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 50799 0.71 0.411209
Target:  5'- cACGAGGCGUCGGcccCGGCGCuGUacaGACa -3'
miRNA:   3'- aUGCUCCGCGGCCu--GUCGCGcCG---CUG- -5'
8984 5' -62.9 NC_002512.2 + 111231 0.71 0.411209
Target:  5'- gACG-GGCgGCCGGGCgcccggAGCGUcgGGCGGCa -3'
miRNA:   3'- aUGCuCCG-CGGCCUG------UCGCG--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 227621 0.71 0.419379
Target:  5'- gGCG-GGCGgCGG-CGGCGaggucaGGCGACg -3'
miRNA:   3'- aUGCuCCGCgGCCuGUCGCg-----CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 195005 0.71 0.419379
Target:  5'- gGCGAcGGCGgucCCGGcgGCGGCGacgaCGGCGACg -3'
miRNA:   3'- aUGCU-CCGC---GGCC--UGUCGC----GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 185499 0.71 0.419379
Target:  5'- gGCGca-CGCCGGGCuGCGCGGgGGCc -3'
miRNA:   3'- aUGCuccGCGGCCUGuCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 122790 0.71 0.419379
Target:  5'- -cCGAgGGCGCCGGGCccuG-GCGGCGGg -3'
miRNA:   3'- auGCU-CCGCGGCCUGu--CgCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 136186 0.71 0.426815
Target:  5'- gGCGGGGuCGCCGGGaucGCGUcgacgccGGCGGCc -3'
miRNA:   3'- aUGCUCC-GCGGCCUgu-CGCG-------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 65445 0.71 0.427646
Target:  5'- -cCGAgGGCGCCGaGCGGCuuccCGGCGACc -3'
miRNA:   3'- auGCU-CCGCGGCcUGUCGc---GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 6443 0.71 0.427646
Target:  5'- gGCG-GGCGCCGaGACAGgGguCGGcCGGCa -3'
miRNA:   3'- aUGCuCCGCGGC-CUGUCgC--GCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 92081 0.71 0.427646
Target:  5'- gACGGacGGcCGCCGGAC-GCGCGGCc-- -3'
miRNA:   3'- aUGCU--CC-GCGGCCUGuCGCGCCGcug -5'
8984 5' -62.9 NC_002512.2 + 202085 0.71 0.427646
Target:  5'- gUACGGGGCGCCGGuCAccucguccgaccGCGUccucgucagcuGGUGGCg -3'
miRNA:   3'- -AUGCUCCGCGGCCuGU------------CGCG-----------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 82407 0.71 0.427646
Target:  5'- cGCGGGGgaGCCGGugGuccCGCGGCGGa -3'
miRNA:   3'- aUGCUCCg-CGGCCugUc--GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 6406 0.7 0.435168
Target:  5'- aGgGAGGCGgCGG-CGGCGCuggggaaGGCGGCc -3'
miRNA:   3'- aUgCUCCGCgGCCuGUCGCG-------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 222419 0.7 0.436008
Target:  5'- gGCGGGG-GCCGG-CAGCcGCGccGCGGCu -3'
miRNA:   3'- aUGCUCCgCGGCCuGUCG-CGC--CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.