miRNA display CGI


Results 121 - 140 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 122117 0.7 0.436008
Target:  5'- gACGucggccGCGCUGGACAGCGUGGaCGuGCg -3'
miRNA:   3'- aUGCuc----CGCGGCCUGUCGCGCC-GC-UG- -5'
8984 5' -62.9 NC_002512.2 + 212211 0.7 0.436008
Target:  5'- gACGAGGagauCGUCGG-CGuGCGCGGgGACg -3'
miRNA:   3'- aUGCUCC----GCGGCCuGU-CGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 222419 0.7 0.436008
Target:  5'- gGCGGGG-GCCGG-CAGCcGCGccGCGGCu -3'
miRNA:   3'- aUGCUCCgCGGCCuGUCG-CGC--CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 139249 0.7 0.436008
Target:  5'- cGCGGccgcGGCGCCGGGuCGcgccgcccggcGCGCGGgGGCg -3'
miRNA:   3'- aUGCU----CCGCGGCCU-GU-----------CGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 18693 0.7 0.436008
Target:  5'- -uCGuGGGCGgCGGgcaccccgaGCAGgGCGGCGACg -3'
miRNA:   3'- auGC-UCCGCgGCC---------UGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 131839 0.7 0.441918
Target:  5'- cGgGAGGaGCCGGGCAGgcuagagaugacgcCGCGGCGGa -3'
miRNA:   3'- aUgCUCCgCGGCCUGUC--------------GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 169037 0.7 0.443615
Target:  5'- cGCGAgcGGCGCCGGcaucuccuCGGgcgcgaggggcucCGCGGCGGCg -3'
miRNA:   3'- aUGCU--CCGCGGCCu-------GUC-------------GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 189906 0.7 0.443615
Target:  5'- gACGGcGGCGa-GGACGGCggcuccggucucgGCGGCGACu -3'
miRNA:   3'- aUGCU-CCGCggCCUGUCG-------------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 27598 0.7 0.444465
Target:  5'- gGCGGcacGGCGCCccGGucccACAGCGCGGagaGACg -3'
miRNA:   3'- aUGCU---CCGCGG--CC----UGUCGCGCCg--CUG- -5'
8984 5' -62.9 NC_002512.2 + 90624 0.7 0.444465
Target:  5'- -cCGc-GCGCCGGGCGGCGCGaccCGGCg -3'
miRNA:   3'- auGCucCGCGGCCUGUCGCGCc--GCUG- -5'
8984 5' -62.9 NC_002512.2 + 89420 0.7 0.461648
Target:  5'- cGCGAGGCGgCGuGACGGagaGGUGGCg -3'
miRNA:   3'- aUGCUCCGCgGC-CUGUCgcgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 82034 0.7 0.461648
Target:  5'- -uCGGGgucGCGCCGGcgGCGGuCGCGGCGGg -3'
miRNA:   3'- auGCUC---CGCGGCC--UGUC-GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 57927 0.7 0.461648
Target:  5'- cGCGAGGacggcgaGCgGGagauagacgggcGCGGCGCGGCGGg -3'
miRNA:   3'- aUGCUCCg------CGgCC------------UGUCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 167742 0.7 0.461648
Target:  5'- gGCGAGGagcuGCCGGGC-GU-CGGCGACc -3'
miRNA:   3'- aUGCUCCg---CGGCCUGuCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 43881 0.7 0.461648
Target:  5'- gGCGuccAGGUGCCGGACgacccaccacGGCGCaGgGACa -3'
miRNA:   3'- aUGC---UCCGCGGCCUG----------UCGCGcCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 188545 0.7 0.461648
Target:  5'- cUACcAGGCcaacUCGGGCAGCuccgGCGGCGACg -3'
miRNA:   3'- -AUGcUCCGc---GGCCUGUCG----CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 42574 0.7 0.461648
Target:  5'- gGCG-GGCGCCGcGaggcgaGCGGCGgGGCGGa -3'
miRNA:   3'- aUGCuCCGCGGC-C------UGUCGCgCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 92528 0.7 0.461648
Target:  5'- cGCGcGGaucuacccgGCCGcGGCGGcCGCGGCGACg -3'
miRNA:   3'- aUGCuCCg--------CGGC-CUGUC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 113028 0.7 0.467745
Target:  5'- aGCGAGGCGCCGcAC-GCGUGGUuguucgucacggccGGCa -3'
miRNA:   3'- aUGCUCCGCGGCcUGuCGCGCCG--------------CUG- -5'
8984 5' -62.9 NC_002512.2 + 17041 0.7 0.467745
Target:  5'- --gGAGGgGaCGGACGGCGCccgcgcccaaccccGGCGGCg -3'
miRNA:   3'- augCUCCgCgGCCUGUCGCG--------------CCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.