miRNA display CGI


Results 141 - 160 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 98158 0.7 0.469494
Target:  5'- -cCGGcGGuCGCCgcggucuGGACgGGCGCGGCGACc -3'
miRNA:   3'- auGCU-CC-GCGG-------CCUG-UCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 29928 0.7 0.47037
Target:  5'- gGCGGGaGUgcauaacaucauGCUGGACAGCcggugaGCGGCGGCc -3'
miRNA:   3'- aUGCUC-CG------------CGGCCUGUCG------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 30656 0.7 0.47037
Target:  5'- -uCGGGcuGCGCCGGaucuaccggGCGGCGCGGUcgGACg -3'
miRNA:   3'- auGCUC--CGCGGCC---------UGUCGCGCCG--CUG- -5'
8984 5' -62.9 NC_002512.2 + 182230 0.7 0.476526
Target:  5'- -uCGGcGGCGCCacgugcuucagcagGGACAGCGaCGGCGcCa -3'
miRNA:   3'- auGCU-CCGCGG--------------CCUGUCGC-GCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 4163 0.7 0.479176
Target:  5'- aGCGAGuCGCCGcGGCucGCG-GGCGACa -3'
miRNA:   3'- aUGCUCcGCGGC-CUGu-CGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 95247 0.7 0.479176
Target:  5'- gAgGGGGCGuCCGGAgGGC-CGcGCGGCu -3'
miRNA:   3'- aUgCUCCGC-GGCCUgUCGcGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 146700 0.7 0.479176
Target:  5'- cGCGGacGGCGaCGGAgacgaCGGCGgGGCGGCg -3'
miRNA:   3'- aUGCU--CCGCgGCCU-----GUCGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 154804 0.7 0.479176
Target:  5'- aGCGGGaGUGagcgaCGGagGCAGCgGCGGCGGCa -3'
miRNA:   3'- aUGCUC-CGCg----GCC--UGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 226684 0.7 0.479176
Target:  5'- -cUGA-GCGCCGGGCcgucgccCGCGGCGGCg -3'
miRNA:   3'- auGCUcCGCGGCCUGuc-----GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 95956 0.69 0.487169
Target:  5'- gGCGGGGgGCUGaGGCccggguuGGCGCaGCGGCg -3'
miRNA:   3'- aUGCUCCgCGGC-CUG-------UCGCGcCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 132717 0.69 0.488061
Target:  5'- gGCGAGauccucggcccGUGCCGcaggcGCAGCGCGGCGuCg -3'
miRNA:   3'- aUGCUC-----------CGCGGCc----UGUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 50484 0.69 0.488061
Target:  5'- cACG-GGCGCaGGAUGGCGCgcauccccgaGGCGAUg -3'
miRNA:   3'- aUGCuCCGCGgCCUGUCGCG----------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 129563 0.69 0.497023
Target:  5'- gACGAGGC-CCGGGaGGcCGUGGcCGACc -3'
miRNA:   3'- aUGCUCCGcGGCCUgUC-GCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 228245 0.69 0.497023
Target:  5'- gGCGAacGUGCCGGAC-GCgGgGGCGACu -3'
miRNA:   3'- aUGCUc-CGCGGCCUGuCG-CgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 98128 0.69 0.497023
Target:  5'- -cCGGGGCGCUGGuCGuCGCGGCcGCc -3'
miRNA:   3'- auGCUCCGCGGCCuGUcGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 15927 0.69 0.500629
Target:  5'- ---cAGGUGCCcgacGGAgggauucaaggacauCAGCGCGGCGACu -3'
miRNA:   3'- augcUCCGCGG----CCU---------------GUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 129858 0.69 0.506059
Target:  5'- gGCgGAGGCGgaGGACGGCGgCGGgGGa -3'
miRNA:   3'- aUG-CUCCGCggCCUGUCGC-GCCgCUg -5'
8984 5' -62.9 NC_002512.2 + 87670 0.69 0.506059
Target:  5'- cGCGaAGGCGacgacgucgagaCCgacgGGAC-GCGCGGCGACg -3'
miRNA:   3'- aUGC-UCCGC------------GG----CCUGuCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 127089 0.69 0.506059
Target:  5'- -cCGGaGCGgaGGGCGGCgGCGGCGGCg -3'
miRNA:   3'- auGCUcCGCggCCUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 201696 0.69 0.506059
Target:  5'- cGCGucuGGUGCgGGAuCGGCGgCGGCGuCg -3'
miRNA:   3'- aUGCu--CCGCGgCCU-GUCGC-GCCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.