miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 210961 0.67 0.651197
Target:  5'- aACGAGGuCGuCCGGGCccugugucgcgccuGCGUGGCcGCg -3'
miRNA:   3'- aUGCUCC-GC-GGCCUGu-------------CGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 193433 0.67 0.64737
Target:  5'- cUACGAGcGCGaCCGcGGCcGC-CGGUGGCg -3'
miRNA:   3'- -AUGCUC-CGC-GGC-CUGuCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 144610 0.67 0.64737
Target:  5'- cACGAGguccGCGCCGcGCuGGaCGUGGCGGCc -3'
miRNA:   3'- aUGCUC----CGCGGCcUG-UC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 221037 0.67 0.64737
Target:  5'- aACGGGGUGCCGcccGGCAGCgagcccgucugGCccaagcuccGGCGGCg -3'
miRNA:   3'- aUGCUCCGCGGC---CUGUCG-----------CG---------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 108328 0.67 0.64737
Target:  5'- cGCGcGGCgGgCGGuCGGCGCGGCa-- -3'
miRNA:   3'- aUGCuCCG-CgGCCuGUCGCGCCGcug -5'
8984 5' -62.9 NC_002512.2 + 149364 0.67 0.64737
Target:  5'- gACGGGG-GagaGGACgagGGCGCGGgGACg -3'
miRNA:   3'- aUGCUCCgCgg-CCUG---UCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 9491 0.67 0.646413
Target:  5'- cGCGAgcGGCggguagacgacgGCCGGccccagcACGGCgGCGGCGGCc -3'
miRNA:   3'- aUGCU--CCG------------CGGCC-------UGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 120790 0.67 0.646413
Target:  5'- gGCgGGGGCgGCgGGACGGCgGCGGUcucucggacccggGACg -3'
miRNA:   3'- aUG-CUCCG-CGgCCUGUCG-CGCCG-------------CUG- -5'
8984 5' -62.9 NC_002512.2 + 7563 0.67 0.638753
Target:  5'- --gGAGGCGCCGccGCAGCcuccgguaccgccucCGGCGGCa -3'
miRNA:   3'- augCUCCGCGGCc-UGUCGc--------------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 8364 0.67 0.637796
Target:  5'- gGCGGGaGCGCCGaGGaucCGCGGCGcCg -3'
miRNA:   3'- aUGCUC-CGCGGC-CUgucGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 108408 0.67 0.637796
Target:  5'- -gUGGGGgGgaGGACGGgGaCGGCGGCg -3'
miRNA:   3'- auGCUCCgCggCCUGUCgC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 72800 0.67 0.637796
Target:  5'- gACGGGccCGCC-GugGGCGcCGGCGACc -3'
miRNA:   3'- aUGCUCc-GCGGcCugUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 9017 0.67 0.637796
Target:  5'- --gGAGaGCGCCGaGGCccCGCGGaCGACg -3'
miRNA:   3'- augCUC-CGCGGC-CUGucGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 140522 0.67 0.637796
Target:  5'- cACGuacGGCGCCaGGACGGCcGCcuCGACg -3'
miRNA:   3'- aUGCu--CCGCGG-CCUGUCG-CGccGCUG- -5'
8984 5' -62.9 NC_002512.2 + 83467 0.67 0.628218
Target:  5'- gUGCGGGGCGgCGcGCAGCuucGgGGgGACg -3'
miRNA:   3'- -AUGCUCCGCgGCcUGUCG---CgCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 131613 0.67 0.628218
Target:  5'- gACGGGGa--CGaGCGGCGCGGgGGCa -3'
miRNA:   3'- aUGCUCCgcgGCcUGUCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 119369 0.67 0.628218
Target:  5'- cGCGGGaUGgUGGACGaCGCGGCGGCc -3'
miRNA:   3'- aUGCUCcGCgGCCUGUcGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 72931 0.67 0.628218
Target:  5'- gACGucGGCgaacgGCCGGGCcaccAGgGUGGCGACc -3'
miRNA:   3'- aUGCu-CCG-----CGGCCUG----UCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 108590 0.67 0.628218
Target:  5'- cGgGGGGCcCCGGGgAGCGgCGGCcGCg -3'
miRNA:   3'- aUgCUCCGcGGCCUgUCGC-GCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 58192 0.67 0.628218
Target:  5'- -uCGAGaCGCUGGugAGUGgGcGCGGCg -3'
miRNA:   3'- auGCUCcGCGGCCugUCGCgC-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.