miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 226735 0.67 0.628218
Target:  5'- aGCGAGGCugucCCGGAgaCGGCGgaGGCGuGCg -3'
miRNA:   3'- aUGCUCCGc---GGCCU--GUCGCg-CCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 97351 0.67 0.628218
Target:  5'- -cCGAcGGCGCCGcccGCGGagcggggacCGCGGCGGCc -3'
miRNA:   3'- auGCU-CCGCGGCc--UGUC---------GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 119369 0.67 0.628218
Target:  5'- cGCGGGaUGgUGGACGaCGCGGCGGCc -3'
miRNA:   3'- aUGCUCcGCgGCCUGUcGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 58192 0.67 0.628218
Target:  5'- -uCGAGaCGCUGGugAGUGgGcGCGGCg -3'
miRNA:   3'- auGCUCcGCGGCCugUCGCgC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 130537 0.67 0.628218
Target:  5'- cGCGGGaacaUGCCGGACAG-GCGGUccgaGACg -3'
miRNA:   3'- aUGCUCc---GCGGCCUGUCgCGCCG----CUG- -5'
8984 5' -62.9 NC_002512.2 + 223898 0.67 0.628218
Target:  5'- gAgGAGGaGCgGGAgCGGCGCgGGCGAg -3'
miRNA:   3'- aUgCUCCgCGgCCU-GUCGCG-CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 203148 0.67 0.628218
Target:  5'- -cCGuGGCGUacaGCGGCGcCGGCGACg -3'
miRNA:   3'- auGCuCCGCGgccUGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 95178 0.67 0.628218
Target:  5'- cACGgcccccAGGaUGUCGGGCAGCcCGGCGAg -3'
miRNA:   3'- aUGC------UCC-GCGGCCUGUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 97819 0.67 0.628218
Target:  5'- -cCGGGGaCGCggaguagaGGGCGGCGCgggggaagcggaGGCGACg -3'
miRNA:   3'- auGCUCC-GCGg-------CCUGUCGCG------------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 45471 0.67 0.62726
Target:  5'- -cCGAGGCGaCGGAgaaGGCcgagcgccccccgGCGGCGGCc -3'
miRNA:   3'- auGCUCCGCgGCCUg--UCG-------------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 140946 0.67 0.62726
Target:  5'- gACGAGGCGgaaggggggcggcUCGGuC-GCGUGGUGACc -3'
miRNA:   3'- aUGCUCCGC-------------GGCCuGuCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 38914 0.67 0.618643
Target:  5'- gGCGAcGGC-CCGGAgGGgccgcCGCGGCGGg -3'
miRNA:   3'- aUGCU-CCGcGGCCUgUC-----GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 23329 0.67 0.618643
Target:  5'- gGCGccccGGGcCGCCGGcgguguACgAGUGCGGCGAg -3'
miRNA:   3'- aUGC----UCC-GCGGCC------UG-UCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 132901 0.67 0.618643
Target:  5'- cUGCGuGGCGuCCaGGuACAgGUGCGGCGuCa -3'
miRNA:   3'- -AUGCuCCGC-GG-CC-UGU-CGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 7224 0.67 0.618643
Target:  5'- -uCGAGGCGCCccucggcccGGcCGGCcgucGCGGCGGa -3'
miRNA:   3'- auGCUCCGCGG---------CCuGUCG----CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 192604 0.67 0.618643
Target:  5'- cUGCGGcGCGCgCGGcgGGCGaCGGCGGCc -3'
miRNA:   3'- -AUGCUcCGCG-GCCugUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 24232 0.67 0.618643
Target:  5'- -cCGAGGCGUCGGGCccgcCGaCGGCGuCc -3'
miRNA:   3'- auGCUCCGCGGCCUGuc--GC-GCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 130784 0.67 0.618643
Target:  5'- cACGAGGagggcCGCCGacgcGCAGCacGCGGUGGCc -3'
miRNA:   3'- aUGCUCC-----GCGGCc---UGUCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 210425 0.67 0.618643
Target:  5'- gGCGAGGU-CCGGGauguGGCGuCGGgGACu -3'
miRNA:   3'- aUGCUCCGcGGCCUg---UCGC-GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 130247 0.67 0.618643
Target:  5'- gGCucGGGCGCCGGGCccucCGagGGCGACg -3'
miRNA:   3'- aUGc-UCCGCGGCCUGuc--GCg-CCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.