miRNA display CGI


Results 121 - 140 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 94053 0.67 0.616729
Target:  5'- gGCGAccgggaagGGCGCgGGACccuccuccccccGCGaCGGCGGCg -3'
miRNA:   3'- aUGCU--------CCGCGgCCUGu-----------CGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 123698 0.67 0.609076
Target:  5'- gGCGGGGCGuuGGcGCAGCGguuccgGGUGGa -3'
miRNA:   3'- aUGCUCCGCggCC-UGUCGCg-----CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 128181 0.67 0.609076
Target:  5'- gACGAGGuCGCCGaGCGGgcCGCcGGCGGg -3'
miRNA:   3'- aUGCUCC-GCGGCcUGUC--GCG-CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 35254 0.67 0.609076
Target:  5'- --aGAGGa--CGGGCAGguccccCGCGGCGACg -3'
miRNA:   3'- augCUCCgcgGCCUGUC------GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 11380 0.67 0.609076
Target:  5'- gACGAGGgGUCcGACGGCucggacGCGGaCGACc -3'
miRNA:   3'- aUGCUCCgCGGcCUGUCG------CGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 196398 0.67 0.609076
Target:  5'- cGCGGgucuGGCGCgGGGacgcggGGgGCGGCGGCc -3'
miRNA:   3'- aUGCU----CCGCGgCCUg-----UCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 204804 0.67 0.609076
Target:  5'- cGgGAGGUccgcgucCCGGG-GGCGCGGCGGCu -3'
miRNA:   3'- aUgCUCCGc------GGCCUgUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 201628 0.67 0.609076
Target:  5'- aGCGguAGGCGCCGucguacucGCGGCGCGaCGGCc -3'
miRNA:   3'- aUGC--UCCGCGGCc-------UGUCGCGCcGCUG- -5'
8984 5' -62.9 NC_002512.2 + 197794 0.67 0.609076
Target:  5'- cGCGAGGacacCCGGGCcGCcauCGGCGACc -3'
miRNA:   3'- aUGCUCCgc--GGCCUGuCGc--GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 223772 0.67 0.609076
Target:  5'- aGCGAGGUcgaggGaCCGGACGucGCcggggacgucgGCGGCGACc -3'
miRNA:   3'- aUGCUCCG-----C-GGCCUGU--CG-----------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128273 0.67 0.608121
Target:  5'- cGCGucccGGCGCCGGGCcgacGGCcgcccgcacgaccGCGGgGACc -3'
miRNA:   3'- aUGCu---CCGCGGCCUG----UCG-------------CGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 228300 0.68 0.599525
Target:  5'- gGCGA-GCGCCGGAgaAGCaGCGGacauCGACu -3'
miRNA:   3'- aUGCUcCGCGGCCUg-UCG-CGCC----GCUG- -5'
8984 5' -62.9 NC_002512.2 + 224073 0.68 0.599525
Target:  5'- -uCGAcGcCGCCGaACGGgGCGGCGGCg -3'
miRNA:   3'- auGCUcC-GCGGCcUGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 23114 0.68 0.599525
Target:  5'- gAUGAucGCGCUGGACGaccccauguuccGCGCGgGCGGCa -3'
miRNA:   3'- aUGCUc-CGCGGCCUGU------------CGCGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 67548 0.68 0.599525
Target:  5'- gACGAGGuCGgUGGACAGCGCcauGCaGAUc -3'
miRNA:   3'- aUGCUCC-GCgGCCUGUCGCGc--CG-CUG- -5'
8984 5' -62.9 NC_002512.2 + 78392 0.68 0.599525
Target:  5'- cGCGAGGCcgGCUGGAgaucgagAGCGCGGgaUGACu -3'
miRNA:   3'- aUGCUCCG--CGGCCUg------UCGCGCC--GCUG- -5'
8984 5' -62.9 NC_002512.2 + 92570 0.68 0.599525
Target:  5'- --gGAGGCGCCGacgccGCGGCcgggaGgGGCGGCg -3'
miRNA:   3'- augCUCCGCGGCc----UGUCG-----CgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 118013 0.68 0.599525
Target:  5'- cACGGGGUGgacCCGuacGACgaGGaCGCGGCGACg -3'
miRNA:   3'- aUGCUCCGC---GGC---CUG--UC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 173633 0.68 0.599525
Target:  5'- cGCGGcGGCGaaccCCGGGucgGGgGCGGCGGCa -3'
miRNA:   3'- aUGCU-CCGC----GGCCUg--UCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 82360 0.68 0.598571
Target:  5'- gUGCgGGGGCGgCGGAgGGUgaugcugcggccgGCGGUGGCu -3'
miRNA:   3'- -AUG-CUCCGCgGCCUgUCG-------------CGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.