miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 56375 0.69 0.524334
Target:  5'- gACGGauCGgCGGACGGCGgGGCGAg -3'
miRNA:   3'- aUGCUccGCgGCCUGUCGCgCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 57859 0.74 0.276013
Target:  5'- -gUGGGGCgcaugcugccgGCCGGAcCGGCGaCGGCGGCg -3'
miRNA:   3'- auGCUCCG-----------CGGCCU-GUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 57927 0.7 0.461648
Target:  5'- cGCGAGGacggcgaGCgGGagauagacgggcGCGGCGCGGCGGg -3'
miRNA:   3'- aUGCUCCg------CGgCC------------UGUCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 58192 0.67 0.628218
Target:  5'- -uCGAGaCGCUGGugAGUGgGcGCGGCg -3'
miRNA:   3'- auGCUCcGCGGCCugUCGCgC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 59011 0.69 0.533566
Target:  5'- gGCGAGGaGCCGcucauaGAgGGCGUcgaGGCGACa -3'
miRNA:   3'- aUGCUCCgCGGC------CUgUCGCG---CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 60336 0.68 0.571021
Target:  5'- gGCGaAGGCcacgccGCCGGGCAGC-CGG-GACc -3'
miRNA:   3'- aUGC-UCCG------CGGCCUGUCGcGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 60743 0.68 0.580492
Target:  5'- cGCGAccgcGGCgGCCGGGCGGaCGaggaGcGCGACg -3'
miRNA:   3'- aUGCU----CCG-CGGCCUGUC-GCg---C-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 62580 0.66 0.676001
Target:  5'- -uCGAGGCGCaCGGggucgcggaACAGguCGCgGGUGACg -3'
miRNA:   3'- auGCUCCGCG-GCC---------UGUC--GCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 65445 0.71 0.427646
Target:  5'- -cCGAgGGCGCCGaGCGGCuuccCGGCGACc -3'
miRNA:   3'- auGCU-CCGCGGCcUGUCGc---GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 66214 0.72 0.379541
Target:  5'- gGCGAGGaCGuccCCGGcCAGCuugGCGGUGACg -3'
miRNA:   3'- aUGCUCC-GC---GGCCuGUCG---CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 67548 0.68 0.599525
Target:  5'- gACGAGGuCGgUGGACAGCGCcauGCaGAUc -3'
miRNA:   3'- aUGCUCC-GCgGCCUGUCGCGc--CG-CUG- -5'
8984 5' -62.9 NC_002512.2 + 71013 0.66 0.7137
Target:  5'- gACGGGGgGCCGccgcCGGC-CGGuCGACg -3'
miRNA:   3'- aUGCUCCgCGGCcu--GUCGcGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 72257 0.68 0.598571
Target:  5'- -cCGcAGGUGCaGGaagcccuucuucaGCGGCGUGGCGGCg -3'
miRNA:   3'- auGC-UCCGCGgCC-------------UGUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 72800 0.67 0.637796
Target:  5'- gACGGGccCGCC-GugGGCGcCGGCGACc -3'
miRNA:   3'- aUGCUCc-GCGGcCugUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 72885 0.69 0.524334
Target:  5'- cGCGGGGC-UCGGGCccgaaGCGGCGGCc -3'
miRNA:   3'- aUGCUCCGcGGCCUGucg--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 72931 0.67 0.628218
Target:  5'- gACGucGGCgaacgGCCGGGCcaccAGgGUGGCGACc -3'
miRNA:   3'- aUGCu-CCG-----CGGCCUG----UCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 73983 0.68 0.571021
Target:  5'- cGCGucGGCGCCGGACucguccccGCGCccgccgucGGgGACg -3'
miRNA:   3'- aUGCu-CCGCGGCCUGu-------CGCG--------CCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 74186 0.89 0.029009
Target:  5'- --gGAGGCGCCGGcACAGgGCGGCGACg -3'
miRNA:   3'- augCUCCGCGGCC-UGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 74233 0.68 0.561588
Target:  5'- cGCGGGGCgaacgGCCGGACgccgaAGCGCcGcCGGCu -3'
miRNA:   3'- aUGCUCCG-----CGGCCUG-----UCGCGcC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 74400 0.66 0.704348
Target:  5'- cAUGGGG-GuCCGGACGGUgccgacgaacucGCGGuCGACg -3'
miRNA:   3'- aUGCUCCgC-GGCCUGUCG------------CGCC-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.