miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 74535 0.8 0.113158
Target:  5'- gACGAGGUacaGCCaGGCGGcCGCGGCGACg -3'
miRNA:   3'- aUGCUCCG---CGGcCUGUC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 75038 0.68 0.542856
Target:  5'- gACGAGGgGacgcacgaCGGAgGGCgggggagaccggGCGGCGACg -3'
miRNA:   3'- aUGCUCCgCg-------GCCUgUCG------------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 75270 0.74 0.276013
Target:  5'- cACGAuGGCGgCGacGGCGGCgGCGGCGGCg -3'
miRNA:   3'- aUGCU-CCGCgGC--CUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 75431 0.66 0.7137
Target:  5'- gGCGGGaCGuCCGGAuCGGgGCGG-GACg -3'
miRNA:   3'- aUGCUCcGC-GGCCU-GUCgCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 75570 0.68 0.561588
Target:  5'- gGCGGGGcCGCCGccgucGCGGUcgacGUGGCGGCu -3'
miRNA:   3'- aUGCUCC-GCGGCc----UGUCG----CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 76023 0.72 0.34232
Target:  5'- -gUGAGGCGCC-GACGaCGCGGaCGACg -3'
miRNA:   3'- auGCUCCGCGGcCUGUcGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 77812 0.69 0.515164
Target:  5'- gACGcGGGCGCUaGGACGGCGaugaccGCGACc -3'
miRNA:   3'- aUGC-UCCGCGG-CCUGUCGCgc----CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 78392 0.68 0.599525
Target:  5'- cGCGAGGCcgGCUGGAgaucgagAGCGCGGgaUGACu -3'
miRNA:   3'- aUGCUCCG--CGGCCUg------UCGCGCC--GCUG- -5'
8984 5' -62.9 NC_002512.2 + 80651 0.81 0.095
Target:  5'- gGCGGcGGCGCCGGguccgucggucccGCGGCgGCGGCGACg -3'
miRNA:   3'- aUGCU-CCGCGGCC-------------UGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 80713 0.73 0.307805
Target:  5'- gGCGAgGGCGCgCGGGCccGCG-GGCGGCa -3'
miRNA:   3'- aUGCU-CCGCG-GCCUGu-CGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 80863 0.77 0.174595
Target:  5'- cGCGGGGCucgguGUCGGGCGGUccGCGGCGGCc -3'
miRNA:   3'- aUGCUCCG-----CGGCCUGUCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 81180 0.66 0.676001
Target:  5'- -uUGAuGGCGCCGacGAUccgGGCgaagGCGGCGACg -3'
miRNA:   3'- auGCU-CCGCGGC--CUG---UCG----CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 81351 0.68 0.579543
Target:  5'- ---uGGGCGCCucccucgcggccgGGGCGG-GCGGCGGCc -3'
miRNA:   3'- augcUCCGCGG-------------CCUGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 81947 0.71 0.411209
Target:  5'- gGCgGAGGgGCCGG-C-GCGCGGUGAg -3'
miRNA:   3'- aUG-CUCCgCGGCCuGuCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 81990 0.73 0.301229
Target:  5'- gGCgGGGGCGUCucggGGGCGGuCGCGGCGAg -3'
miRNA:   3'- aUG-CUCCGCGG----CCUGUC-GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 82034 0.7 0.461648
Target:  5'- -uCGGGgucGCGCCGGcgGCGGuCGCGGCGGg -3'
miRNA:   3'- auGCUC---CGCGGCC--UGUC-GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 82360 0.68 0.598571
Target:  5'- gUGCgGGGGCGgCGGAgGGUgaugcugcggccgGCGGUGGCu -3'
miRNA:   3'- -AUG-CUCCGCgGCCUgUCG-------------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 82407 0.71 0.427646
Target:  5'- cGCGGGGgaGCCGGugGuccCGCGGCGGa -3'
miRNA:   3'- aUGCUCCg-CGGCCugUc--GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 83467 0.67 0.628218
Target:  5'- gUGCGGGGCGgCGcGCAGCuucGgGGgGACg -3'
miRNA:   3'- -AUGCUCCGCgGCcUGUCG---CgCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 83798 0.71 0.411209
Target:  5'- -cCGAGgaccGCGUCGGGC-GCGcCGGCGGCg -3'
miRNA:   3'- auGCUC----CGCGGCCUGuCGC-GCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.