miRNA display CGI


Results 121 - 140 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 84542 0.82 0.082044
Target:  5'- ----cGGCGUCGGGCGGCGCGGCGAg -3'
miRNA:   3'- augcuCCGCGGCCUGUCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 85263 0.66 0.666479
Target:  5'- cGCGuGGcCGCCacGucCAGCGCGGCG-Cg -3'
miRNA:   3'- aUGCuCC-GCGG--CcuGUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 85563 0.66 0.704348
Target:  5'- gAgGAGGCGCgGGA--GCGgGaGCGGCc -3'
miRNA:   3'- aUgCUCCGCGgCCUguCGCgC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 86441 0.75 0.246901
Target:  5'- gACGGGGCGCgGGACGGgggacgggugcCGCGuGUGACu -3'
miRNA:   3'- aUGCUCCGCGgCCUGUC-----------GCGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 87670 0.69 0.506059
Target:  5'- cGCGaAGGCGacgacgucgagaCCgacgGGAC-GCGCGGCGACg -3'
miRNA:   3'- aUGC-UCCGC------------GG----CCUGuCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 87836 0.71 0.395171
Target:  5'- gGCcGGGCGUCGGGCccuCGCGGCGGg -3'
miRNA:   3'- aUGcUCCGCGGCCUGuc-GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 89006 0.78 0.162609
Target:  5'- cGCGGGGaCGUCGGGCAGCGCGauccgaGCGAa -3'
miRNA:   3'- aUGCUCC-GCGGCCUGUCGCGC------CGCUg -5'
8984 5' -62.9 NC_002512.2 + 89420 0.7 0.461648
Target:  5'- cGCGAGGCGgCGuGACGGagaGGUGGCg -3'
miRNA:   3'- aUGCUCCGCgGC-CUGUCgcgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 89522 0.68 0.571021
Target:  5'- gACcAGGUGCCGGuuguCGGCGCGGaUGuACu -3'
miRNA:   3'- aUGcUCCGCGGCCu---GUCGCGCC-GC-UG- -5'
8984 5' -62.9 NC_002512.2 + 89670 0.66 0.704348
Target:  5'- gACGcGGUGCgaaGGCGGCGgGGCGAg -3'
miRNA:   3'- aUGCuCCGCGgc-CUGUCGCgCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 90624 0.7 0.444465
Target:  5'- -cCGc-GCGCCGGGCGGCGCGaccCGGCg -3'
miRNA:   3'- auGCucCGCGGCCUGUCGCGCc--GCUG- -5'
8984 5' -62.9 NC_002512.2 + 90933 0.66 0.704348
Target:  5'- gACGGGcGCGaCCgGGGCGuGCGUGggcGCGACg -3'
miRNA:   3'- aUGCUC-CGC-GG-CCUGU-CGCGC---CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 91008 0.66 0.70341
Target:  5'- --aGGGGCGUCGGAggcccauCAGCGggauaCGGgGACu -3'
miRNA:   3'- augCUCCGCGGCCU-------GUCGC-----GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 91303 0.72 0.378771
Target:  5'- aAgGAGGUGUCGG-CGGCGCagagggagcucacGGCGGCg -3'
miRNA:   3'- aUgCUCCGCGGCCuGUCGCG-------------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 91869 0.76 0.191797
Target:  5'- -cCGAGGcCGCCGucCGGCGCGgGCGGCg -3'
miRNA:   3'- auGCUCC-GCGGCcuGUCGCGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 92081 0.71 0.427646
Target:  5'- gACGGacGGcCGCCGGAC-GCGCGGCc-- -3'
miRNA:   3'- aUGCU--CC-GCGGCCUGuCGCGCCGcug -5'
8984 5' -62.9 NC_002512.2 + 92528 0.7 0.461648
Target:  5'- cGCGcGGaucuacccgGCCGcGGCGGcCGCGGCGACg -3'
miRNA:   3'- aUGCuCCg--------CGGC-CUGUC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 92570 0.68 0.599525
Target:  5'- --gGAGGCGCCGacgccGCGGCcgggaGgGGCGGCg -3'
miRNA:   3'- augCUCCGCGGCc----UGUCG-----CgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 92635 0.68 0.589995
Target:  5'- gGCGGccgccGGCGCCGGGacccGCGCGGauccggGACg -3'
miRNA:   3'- aUGCU-----CCGCGGCCUgu--CGCGCCg-----CUG- -5'
8984 5' -62.9 NC_002512.2 + 94053 0.67 0.616729
Target:  5'- gGCGAccgggaagGGCGCgGGACccuccuccccccGCGaCGGCGGCg -3'
miRNA:   3'- aUGCU--------CCGCGgCCUGu-----------CGC-GCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.