miRNA display CGI


Results 141 - 160 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 95178 0.67 0.628218
Target:  5'- cACGgcccccAGGaUGUCGGGCAGCcCGGCGAg -3'
miRNA:   3'- aUGC------UCC-GCGGCCUGUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 95247 0.7 0.479176
Target:  5'- gAgGGGGCGuCCGGAgGGC-CGcGCGGCu -3'
miRNA:   3'- aUgCUCCGC-GGCCUgUCGcGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 95306 0.77 0.187362
Target:  5'- gACGAGGCGCCGaaGCAGCGgCgGGCGAa -3'
miRNA:   3'- aUGCUCCGCGGCc-UGUCGC-G-CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 95792 0.71 0.411209
Target:  5'- aGCGguAGGCGCCGG--GGCGCGGauccgauaGACg -3'
miRNA:   3'- aUGC--UCCGCGGCCugUCGCGCCg-------CUG- -5'
8984 5' -62.9 NC_002512.2 + 95956 0.69 0.487169
Target:  5'- gGCGGGGgGCUGaGGCccggguuGGCGCaGCGGCg -3'
miRNA:   3'- aUGCUCCgCGGC-CUG-------UCGCGcCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 96209 0.78 0.144272
Target:  5'- cGCGAGGUcggccacggcgGCCGcGGCGGCgGCGGCGACc -3'
miRNA:   3'- aUGCUCCG-----------CGGC-CUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 96699 0.66 0.685491
Target:  5'- cGCcgcGUGCCGGACuGCGUGGUGGu -3'
miRNA:   3'- aUGcucCGCGGCCUGuCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 97351 0.67 0.628218
Target:  5'- -cCGAcGGCGCCGcccGCGGagcggggacCGCGGCGGCc -3'
miRNA:   3'- auGCU-CCGCGGCc--UGUC---------GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 97819 0.67 0.628218
Target:  5'- -cCGGGGaCGCggaguagaGGGCGGCGCgggggaagcggaGGCGACg -3'
miRNA:   3'- auGCUCC-GCGg-------CCUGUCGCG------------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 98128 0.69 0.497023
Target:  5'- -cCGGGGCGCUGGuCGuCGCGGCcGCc -3'
miRNA:   3'- auGCUCCGCGGCCuGUcGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 98158 0.7 0.469494
Target:  5'- -cCGGcGGuCGCCgcggucuGGACgGGCGCGGCGACc -3'
miRNA:   3'- auGCU-CC-GCGG-------CCUG-UCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 99266 0.72 0.379541
Target:  5'- -cCGAGGaCGCCGGAC-GCGgGGuCGAg -3'
miRNA:   3'- auGCUCC-GCGGCCUGuCGCgCC-GCUg -5'
8984 5' -62.9 NC_002512.2 + 99571 0.66 0.676001
Target:  5'- -uCGGGGgGUacGACGGCGUGGCGcACa -3'
miRNA:   3'- auGCUCCgCGgcCUGUCGCGCCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 99898 0.66 0.704348
Target:  5'- cACGcGGCGCCGc-CGGCGCucccGGCGGu -3'
miRNA:   3'- aUGCuCCGCGGCcuGUCGCG----CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 99909 0.68 0.568187
Target:  5'- -uCGAgGGCGCCGGgggcccgccgaaggGCGGCGuCGGCuGCu -3'
miRNA:   3'- auGCU-CCGCGGCC--------------UGUCGC-GCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 100046 0.73 0.31449
Target:  5'- cGCcGGGCGCUGaGACgcgGGgGCGGCGGCg -3'
miRNA:   3'- aUGcUCCGCGGC-CUG---UCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 100227 0.72 0.335199
Target:  5'- -uCGAGGCGgCGucGACGG-GCGGCGACc -3'
miRNA:   3'- auGCUCCGCgGC--CUGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 100344 0.74 0.288405
Target:  5'- gGCG-GGCGCCGGccacGCAGCaCGGCGuCg -3'
miRNA:   3'- aUGCuCCGCGGCC----UGUCGcGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 101431 0.78 0.155035
Target:  5'- --aGcGGCgGCCGG-CGGCGCGGCGACg -3'
miRNA:   3'- augCuCCG-CGGCCuGUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 101634 0.75 0.241392
Target:  5'- cGCGAGuCGCCgcucgaGGGgAGCGCGGCGGCc -3'
miRNA:   3'- aUGCUCcGCGG------CCUgUCGCGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.