miRNA display CGI


Results 41 - 60 of 379 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 208888 0.66 0.7137
Target:  5'- cGgGAGGgGCCGGGaauccccGCGCGGgaGGCu -3'
miRNA:   3'- aUgCUCCgCGGCCUgu-----CGCGCCg-CUG- -5'
8984 5' -62.9 NC_002512.2 + 207601 0.72 0.349549
Target:  5'- cUGCGAcGGCGgCGG-CuGCuGCGGCGGCg -3'
miRNA:   3'- -AUGCU-CCGCgGCCuGuCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 205058 0.68 0.580492
Target:  5'- cGCG-GGC-CCGGACcuacuggcuGGagaGCGGCGGCg -3'
miRNA:   3'- aUGCuCCGcGGCCUG---------UCg--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 204804 0.67 0.609076
Target:  5'- cGgGAGGUccgcgucCCGGG-GGCGCGGCGGCu -3'
miRNA:   3'- aUgCUCCGc------GGCCUgUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 204732 0.72 0.356887
Target:  5'- gGCGGGGgGCCGGACccgGGUGCucaGCGAUc -3'
miRNA:   3'- aUGCUCCgCGGCCUG---UCGCGc--CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 203148 0.67 0.628218
Target:  5'- -cCGuGGCGUacaGCGGCGcCGGCGACg -3'
miRNA:   3'- auGCuCCGCGgccUGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 202515 0.66 0.676001
Target:  5'- gGCgGAGGCGgaGG-CGGCGgCGGgGGCg -3'
miRNA:   3'- aUG-CUCCGCggCCuGUCGC-GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 202085 0.71 0.427646
Target:  5'- gUACGGGGCGCCGGuCAccucguccgaccGCGUccucgucagcuGGUGGCg -3'
miRNA:   3'- -AUGCUCCGCGGCCuGU------------CGCG-----------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 201778 0.79 0.130983
Target:  5'- gACGAGGgugagaGCgCGGACGGgGCGGCGACc -3'
miRNA:   3'- aUGCUCCg-----CG-GCCUGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 201696 0.69 0.506059
Target:  5'- cGCGucuGGUGCgGGAuCGGCGgCGGCGuCg -3'
miRNA:   3'- aUGCu--CCGCGgCCU-GUCGC-GCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 201628 0.67 0.609076
Target:  5'- aGCGguAGGCGCCGucguacucGCGGCGCGaCGGCc -3'
miRNA:   3'- aUGC--UCCGCGGCc-------UGUCGCGCcGCUG- -5'
8984 5' -62.9 NC_002512.2 + 200806 0.66 0.685491
Target:  5'- gACGAGGCGggacgcgacggcaUGGACgcgaaggucagcgggGGCGCGGCG-Cg -3'
miRNA:   3'- aUGCUCCGCg------------GCCUG---------------UCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 198659 0.66 0.685491
Target:  5'- cACGAaaCGCa--GCAGCGUGGCGACg -3'
miRNA:   3'- aUGCUccGCGgccUGUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 198156 0.68 0.542856
Target:  5'- cGCGGgccgggucGGCGCCGGcCGGCGgaccuccacguCGGCGAa -3'
miRNA:   3'- aUGCU--------CCGCGGCCuGUCGC-----------GCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 198018 0.66 0.7137
Target:  5'- gACgGGGGCGagGGAC-GCGCGcGCGAg -3'
miRNA:   3'- aUG-CUCCGCggCCUGuCGCGC-CGCUg -5'
8984 5' -62.9 NC_002512.2 + 197794 0.67 0.609076
Target:  5'- cGCGAGGacacCCGGGCcGCcauCGGCGACc -3'
miRNA:   3'- aUGCUCCgc--GGCCUGuCGc--GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 196398 0.67 0.609076
Target:  5'- cGCGGgucuGGCGCgGGGacgcggGGgGCGGCGGCc -3'
miRNA:   3'- aUGCU----CCGCGgCCUg-----UCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 195005 0.71 0.419379
Target:  5'- gGCGAcGGCGgucCCGGcgGCGGCGacgaCGGCGACg -3'
miRNA:   3'- aUGCU-CCGC---GGCC--UGUCGC----GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 194916 0.75 0.246901
Target:  5'- cGCGAGGCccaGCCGGACccGGuCGCGGCcGCu -3'
miRNA:   3'- aUGCUCCG---CGGCCUG--UC-GCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 193433 0.67 0.64737
Target:  5'- cUACGAGcGCGaCCGcGGCcGC-CGGUGGCg -3'
miRNA:   3'- -AUGCUC-CGC-GGC-CUGuCGcGCCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.