miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 182230 0.7 0.476526
Target:  5'- -uCGGcGGCGCCacgugcuucagcagGGACAGCGaCGGCGcCa -3'
miRNA:   3'- auGCU-CCGCGG--------------CCUGUCGC-GCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 178691 0.66 0.704348
Target:  5'- -cCGAGGC-CC--GCAGCGCGGCcGCc -3'
miRNA:   3'- auGCUCCGcGGccUGUCGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 175774 0.68 0.589043
Target:  5'- aGCGGGGUggucacgucgcagGCC-GACAGCuuGGCGGCg -3'
miRNA:   3'- aUGCUCCG-------------CGGcCUGUCGcgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 173633 0.68 0.599525
Target:  5'- cGCGGcGGCGaaccCCGGGucgGGgGCGGCGGCa -3'
miRNA:   3'- aUGCU-CCGC----GGCCUg--UCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 170806 0.73 0.301229
Target:  5'- gGCGAGGgGagcgaCGGggGCGGCaGCGGCGGCa -3'
miRNA:   3'- aUGCUCCgCg----GCC--UGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 170464 0.68 0.589995
Target:  5'- cACGAuGGCGCacaGGuuGCAGCGCGuGuCGAUc -3'
miRNA:   3'- aUGCU-CCGCGg--CC--UGUCGCGC-C-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 169037 0.7 0.443615
Target:  5'- cGCGAgcGGCGCCGGcaucuccuCGGgcgcgaggggcucCGCGGCGGCg -3'
miRNA:   3'- aUGCU--CCGCGGCCu-------GUC-------------GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 168141 0.66 0.666479
Target:  5'- gGCGAGGgGCUGGGgGuGgGgGGCGGa -3'
miRNA:   3'- aUGCUCCgCGGCCUgU-CgCgCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 167742 0.7 0.461648
Target:  5'- gGCGAGGagcuGCCGGGC-GU-CGGCGACc -3'
miRNA:   3'- aUGCUCCg---CGGCCUGuCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 166809 0.68 0.542856
Target:  5'- --gGAGGUGgUGGugGGCGaaGCGACg -3'
miRNA:   3'- augCUCCGCgGCCugUCGCgcCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 166454 0.8 0.110417
Target:  5'- gGCGAcGGCGCCGGGCucgAGgGCGGgGACg -3'
miRNA:   3'- aUGCU-CCGCGGCCUG---UCgCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 165397 0.66 0.7137
Target:  5'- -uCGGGGCGCUcaugguccaGGAgGGC-CGGCGGg -3'
miRNA:   3'- auGCUCCGCGG---------CCUgUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 164630 0.74 0.288405
Target:  5'- -uCGAGGaGuCCGGACGGCagGCGGCGAUc -3'
miRNA:   3'- auGCUCCgC-GGCCUGUCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 164572 0.69 0.533566
Target:  5'- aGCGgcaAGGCGuacuCCGGGgAGgaCGCGGCGGCg -3'
miRNA:   3'- aUGC---UCCGC----GGCCUgUC--GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 164430 0.67 0.656933
Target:  5'- cAUGcAGGuCGCCGGGaagccgcuCGGCGCccucggcgggGGCGACg -3'
miRNA:   3'- aUGC-UCC-GCGGCCU--------GUCGCG----------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 161840 0.74 0.276013
Target:  5'- gACGAGGCuuCCGGACacGGCGuCGGCGGu -3'
miRNA:   3'- aUGCUCCGc-GGCCUG--UCGC-GCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 161687 0.66 0.676001
Target:  5'- gACGuguGGCGCgUGGaagauggagacGCGGC-CGGCGACg -3'
miRNA:   3'- aUGCu--CCGCG-GCC-----------UGUCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 160902 0.71 0.384964
Target:  5'- aGCGGGGCgGCCggggcaagggacgcGGACAGuCGCuGCGGCg -3'
miRNA:   3'- aUGCUCCG-CGG--------------CCUGUC-GCGcCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 160837 0.68 0.571021
Target:  5'- gGCG-GGCgGCCGG-CGGCGCugGGCG-Ca -3'
miRNA:   3'- aUGCuCCG-CGGCCuGUCGCG--CCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 159864 0.68 0.561588
Target:  5'- gUAUGGGGCGCUGGAcCGGaCGCaGGgGGu -3'
miRNA:   3'- -AUGCUCCGCGGCCU-GUC-GCG-CCgCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.