miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 159656 0.69 0.533566
Target:  5'- gACGA-GCGCCGGcACcgAGC-CGGUGACg -3'
miRNA:   3'- aUGCUcCGCGGCC-UG--UCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 159108 0.66 0.676001
Target:  5'- gACGAGGaCGaCgGGAUcugccccagaAGCGCGGCcGCu -3'
miRNA:   3'- aUGCUCC-GC-GgCCUG----------UCGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 158934 0.71 0.398346
Target:  5'- gGCgGGGGCGCCGG-CGGCcucucggucagcaaCGGCGGCg -3'
miRNA:   3'- aUG-CUCCGCGGCCuGUCGc-------------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 158831 0.66 0.704348
Target:  5'- cGgGAGGUGCUgacgcgGGGgAGCGgGGgGACg -3'
miRNA:   3'- aUgCUCCGCGG------CCUgUCGCgCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 157151 0.78 0.151369
Target:  5'- -cCGGGGCgggcggcggGCCGGGCGGCGUGgGCGGCg -3'
miRNA:   3'- auGCUCCG---------CGGCCUGUCGCGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 157079 0.71 0.395171
Target:  5'- -cCGGGGuCGCCGGcgcccACGGCGggcccguccCGGCGACg -3'
miRNA:   3'- auGCUCC-GCGGCC-----UGUCGC---------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 156521 0.71 0.403139
Target:  5'- gGCGGGGCGCgGG--GGUcCGGCGGCg -3'
miRNA:   3'- aUGCUCCGCGgCCugUCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 156476 0.66 0.67505
Target:  5'- --gGGGGCGgCGGGCucGGCGggcugggcggacaCGGCGGCc -3'
miRNA:   3'- augCUCCGCgGCCUG--UCGC-------------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 155630 0.72 0.364332
Target:  5'- gUGCGAGGagaGCCGG-CGGCGCuucGGCGuCc -3'
miRNA:   3'- -AUGCUCCg--CGGCCuGUCGCG---CCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 155362 0.73 0.301229
Target:  5'- cACGAgcGGCGCUcgaGGuCGGgGCGGCGGCg -3'
miRNA:   3'- aUGCU--CCGCGG---CCuGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 154804 0.7 0.479176
Target:  5'- aGCGGGaGUGagcgaCGGagGCAGCgGCGGCGGCa -3'
miRNA:   3'- aUGCUC-CGCg----GCC--UGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 153950 0.71 0.406355
Target:  5'- -uCGGGGaCGUCGGguucuucgggguccgGCGGCGcCGGCGGCg -3'
miRNA:   3'- auGCUCC-GCGGCC---------------UGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 153356 0.73 0.301229
Target:  5'- gGCGGGuccCGCUGGGCuGgGCGGCGGCu -3'
miRNA:   3'- aUGCUCc--GCGGCCUGuCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 153174 0.8 0.118832
Target:  5'- cUACGGGGCGgCGGGCAGCGguggggagGGCGGCa -3'
miRNA:   3'- -AUGCUCCGCgGCCUGUCGCg-------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 152765 0.72 0.377233
Target:  5'- gGCGAGGUcucuaucgaugaccGCCGGGCcuccgucucggaGGUccGCGGCGACg -3'
miRNA:   3'- aUGCUCCG--------------CGGCCUG------------UCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 152439 0.69 0.533566
Target:  5'- cGCGuGGCGauuucgaCGGGC-GCGCGGCGu- -3'
miRNA:   3'- aUGCuCCGCg------GCCUGuCGCGCCGCug -5'
8984 5' -62.9 NC_002512.2 + 150329 0.72 0.364332
Target:  5'- gGCGAGGaCGCCGcGGCGGUGauggaGuGCGACc -3'
miRNA:   3'- aUGCUCC-GCGGC-CUGUCGCg----C-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 149418 0.66 0.712767
Target:  5'- cGCGAGGgGaCCGcGGCgggggcgGGCGCGGgGGg -3'
miRNA:   3'- aUGCUCCgC-GGC-CUG-------UCGCGCCgCUg -5'
8984 5' -62.9 NC_002512.2 + 149364 0.67 0.64737
Target:  5'- gACGGGG-GagaGGACgagGGCGCGGgGACg -3'
miRNA:   3'- aUGCUCCgCgg-CCUG---UCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 148446 0.68 0.561588
Target:  5'- gACGGGG-GCCGGGCccccCGCGG-GACg -3'
miRNA:   3'- aUGCUCCgCGGCCUGuc--GCGCCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.