miRNA display CGI


Results 121 - 140 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 148105 0.72 0.371124
Target:  5'- gGCGGcGGCGCCGaagacgaGGCGGCGgUGGUGACc -3'
miRNA:   3'- aUGCU-CCGCGGC-------CUGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 147481 0.68 0.589995
Target:  5'- cGCGcGGGCGCugCGGACgGGCGCGacCGGCg -3'
miRNA:   3'- aUGC-UCCGCG--GCCUG-UCGCGCc-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 146700 0.7 0.479176
Target:  5'- cGCGGacGGCGaCGGAgacgaCGGCGgGGCGGCg -3'
miRNA:   3'- aUGCU--CCGCgGCCU-----GUCGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 145532 0.68 0.58619
Target:  5'- cGCGucGgGCCGGAgcaucccgcucgaGGaCGCGGCGACg -3'
miRNA:   3'- aUGCucCgCGGCCUg------------UC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 145095 0.74 0.288405
Target:  5'- cGCGAGGCGUCGcGGCuGC-CGGcCGACa -3'
miRNA:   3'- aUGCUCCGCGGC-CUGuCGcGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 144610 0.67 0.64737
Target:  5'- cACGAGguccGCGCCGcGCuGGaCGUGGCGGCc -3'
miRNA:   3'- aUGCUC----CGCGGCcUG-UC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 143689 0.66 0.694942
Target:  5'- gGCGGGGUGUCGGGCA-CGgagGGcCGACc -3'
miRNA:   3'- aUGCUCCGCGGCCUGUcGCg--CC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 140946 0.67 0.62726
Target:  5'- gACGAGGCGgaaggggggcggcUCGGuC-GCGUGGUGACc -3'
miRNA:   3'- aUGCUCCGC-------------GGCCuGuCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 140522 0.67 0.637796
Target:  5'- cACGuacGGCGCCaGGACGGCcGCcuCGACg -3'
miRNA:   3'- aUGCu--CCGCGG-CCUGUCG-CGccGCUG- -5'
8984 5' -62.9 NC_002512.2 + 139249 0.7 0.436008
Target:  5'- cGCGGccgcGGCGCCGGGuCGcgccgcccggcGCGCGGgGGCg -3'
miRNA:   3'- aUGCU----CCGCGGCCU-GU-----------CGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 139013 0.66 0.704348
Target:  5'- aACaGGGgGuCCGacGGCGGCGCGGaCGGCu -3'
miRNA:   3'- aUGcUCCgC-GGC--CUGUCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 138016 0.68 0.542856
Target:  5'- cGCcc-GCGCCGGACGGCGgccuCGGgGGCa -3'
miRNA:   3'- aUGcucCGCGGCCUGUCGC----GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 137225 0.66 0.684543
Target:  5'- gGCGcGGGCGgccgucCCGGAuccgcgcggguccCGGCGCcGGCGGCc -3'
miRNA:   3'- aUGC-UCCGC------GGCCU-------------GUCGCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 136186 0.71 0.426815
Target:  5'- gGCGGGGuCGCCGGGaucGCGUcgacgccGGCGGCc -3'
miRNA:   3'- aUGCUCC-GCGGCCUgu-CGCG-------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 135897 0.68 0.589995
Target:  5'- -uCGAGGaCGCguucgCGGAC-GCGCaGCGACa -3'
miRNA:   3'- auGCUCC-GCG-----GCCUGuCGCGcCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 135205 0.72 0.34232
Target:  5'- cACGAGggcagcugcGCGCCGGAgAGCGUGccgaccGCGACg -3'
miRNA:   3'- aUGCUC---------CGCGGCCUgUCGCGC------CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 133989 0.65 0.719283
Target:  5'- aGCuGAGGaCGauccaccacaucccCCGGACGaagaucuGCGCGGUGGCg -3'
miRNA:   3'- aUG-CUCC-GC--------------GGCCUGU-------CGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 133900 0.66 0.698711
Target:  5'- gGCGgucccGGGCGCUGGccuaccuccugcuguACGGCGgCGGCccGACg -3'
miRNA:   3'- aUGC-----UCCGCGGCC---------------UGUCGC-GCCG--CUG- -5'
8984 5' -62.9 NC_002512.2 + 133876 0.71 0.387304
Target:  5'- gUACGGGGCguuccGCCuGGCGGuCGCGGCGcCg -3'
miRNA:   3'- -AUGCUCCG-----CGGcCUGUC-GCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 133231 0.68 0.571021
Target:  5'- aGCGAGGa--CGGG-AGgGCGGCGGCg -3'
miRNA:   3'- aUGCUCCgcgGCCUgUCgCGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.