miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 124625 0.71 0.403139
Target:  5'- gGCGucGGCGCCuGGauccgggugcGCGGCGCGGCG-Cu -3'
miRNA:   3'- aUGCu-CCGCGG-CC----------UGUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 153950 0.71 0.406355
Target:  5'- -uCGGGGaCGUCGGguucuucgggguccgGCGGCGcCGGCGGCg -3'
miRNA:   3'- auGCUCC-GCGGCC---------------UGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 22986 0.71 0.411209
Target:  5'- gGCGGGaCG-CGGGCGGCGCuGGUGACc -3'
miRNA:   3'- aUGCUCcGCgGCCUGUCGCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 50799 0.71 0.411209
Target:  5'- cACGAGGCGUCGGcccCGGCGCuGUacaGACa -3'
miRNA:   3'- aUGCUCCGCGGCCu--GUCGCGcCG---CUG- -5'
8984 5' -62.9 NC_002512.2 + 81947 0.71 0.411209
Target:  5'- gGCgGAGGgGCCGG-C-GCGCGGUGAg -3'
miRNA:   3'- aUG-CUCCgCGGCCuGuCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 83798 0.71 0.411209
Target:  5'- -cCGAGgaccGCGUCGGGC-GCGcCGGCGGCg -3'
miRNA:   3'- auGCUC----CGCGGCCUGuCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 122790 0.71 0.419379
Target:  5'- -cCGAgGGCGCCGGGCccuG-GCGGCGGg -3'
miRNA:   3'- auGCU-CCGCGGCCUGu--CgCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 12384 0.71 0.387304
Target:  5'- -cCGAGcuCGCCuucGGGCGGCgGCGGCGGCg -3'
miRNA:   3'- auGCUCc-GCGG---CCUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 130153 0.72 0.379541
Target:  5'- cGCGGGGCccggcggcggGCCGGcccgcgACGGCGCGGaCGAg -3'
miRNA:   3'- aUGCUCCG----------CGGCC------UGUCGCGCC-GCUg -5'
8984 5' -62.9 NC_002512.2 + 29009 0.72 0.379541
Target:  5'- aACGAcGUGgUGGGCGGCGUGGuCGACg -3'
miRNA:   3'- aUGCUcCGCgGCCUGUCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 3057 0.72 0.335199
Target:  5'- -uUGAcGGCGgCGGACgcGGCgGCGGCGGCg -3'
miRNA:   3'- auGCU-CCGCgGCCUG--UCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 100227 0.72 0.335199
Target:  5'- -uCGAGGCGgCGucGACGG-GCGGCGACc -3'
miRNA:   3'- auGCUCCGCgGC--CUGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 9746 0.72 0.356887
Target:  5'- cUugGGGGCggcggaGCCGGACccgccgccccGCGUGGCGGCu -3'
miRNA:   3'- -AugCUCCG------CGGCCUGu---------CGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 32724 0.72 0.356887
Target:  5'- --aGAGGCGCgGGuggaagACGGcCGUGGCGACc -3'
miRNA:   3'- augCUCCGCGgCC------UGUC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 10543 0.72 0.364332
Target:  5'- -uCGcGGaCGCCGGGCAGC-CGGCGGg -3'
miRNA:   3'- auGCuCC-GCGGCCUGUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 121839 0.72 0.371124
Target:  5'- gACGGGGgGgaGGACGGCGgggaggaCGGCGGCg -3'
miRNA:   3'- aUGCUCCgCggCCUGUCGC-------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 44543 0.72 0.371884
Target:  5'- gGCGAuGGCGgCGGcCAcccGgGCGGCGACg -3'
miRNA:   3'- aUGCU-CCGCgGCCuGU---CgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 152765 0.72 0.377233
Target:  5'- gGCGAGGUcucuaucgaugaccGCCGGGCcuccgucucggaGGUccGCGGCGACg -3'
miRNA:   3'- aUGCUCCG--------------CGGCCUG------------UCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 66214 0.72 0.379541
Target:  5'- gGCGAGGaCGuccCCGGcCAGCuugGCGGUGACg -3'
miRNA:   3'- aUGCUCC-GC---GGCCuGUCG---CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 136186 0.71 0.426815
Target:  5'- gGCGGGGuCGCCGGGaucGCGUcgacgccGGCGGCc -3'
miRNA:   3'- aUGCUCC-GCGGCCUgu-CGCG-------CCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.