miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 18693 0.7 0.436008
Target:  5'- -uCGuGGGCGgCGGgcaccccgaGCAGgGCGGCGACg -3'
miRNA:   3'- auGC-UCCGCgGCC---------UGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 139249 0.7 0.436008
Target:  5'- cGCGGccgcGGCGCCGGGuCGcgccgcccggcGCGCGGgGGCg -3'
miRNA:   3'- aUGCU----CCGCGGCCU-GU-----------CGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 27598 0.7 0.444465
Target:  5'- gGCGGcacGGCGCCccGGucccACAGCGCGGagaGACg -3'
miRNA:   3'- aUGCU---CCGCGG--CC----UGUCGCGCCg--CUG- -5'
8984 5' -62.9 NC_002512.2 + 42574 0.7 0.461648
Target:  5'- gGCG-GGCGCCGcGaggcgaGCGGCGgGGCGGa -3'
miRNA:   3'- aUGCuCCGCGGC-C------UGUCGCgCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 43881 0.7 0.461648
Target:  5'- gGCGuccAGGUGCCGGACgacccaccacGGCGCaGgGACa -3'
miRNA:   3'- aUGC---UCCGCGGCCUG----------UCGCGcCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 50799 0.71 0.411209
Target:  5'- cACGAGGCGUCGGcccCGGCGCuGUacaGACa -3'
miRNA:   3'- aUGCUCCGCGGCCu--GUCGCGcCG---CUG- -5'
8984 5' -62.9 NC_002512.2 + 22986 0.71 0.411209
Target:  5'- gGCGGGaCG-CGGGCGGCGCuGGUGACc -3'
miRNA:   3'- aUGCUCcGCgGCCUGUCGCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 10543 0.72 0.364332
Target:  5'- -uCGcGGaCGCCGGGCAGC-CGGCGGg -3'
miRNA:   3'- auGCuCC-GCGGCCUGUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 121839 0.72 0.371124
Target:  5'- gACGGGGgGgaGGACGGCGgggaggaCGGCGGCg -3'
miRNA:   3'- aUGCUCCgCggCCUGUCGC-------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 44543 0.72 0.371884
Target:  5'- gGCGAuGGCGgCGGcCAcccGgGCGGCGACg -3'
miRNA:   3'- aUGCU-CCGCgGCCuGU---CgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 152765 0.72 0.377233
Target:  5'- gGCGAGGUcucuaucgaugaccGCCGGGCcuccgucucggaGGUccGCGGCGACg -3'
miRNA:   3'- aUGCUCCG--------------CGGCCUG------------UCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 66214 0.72 0.379541
Target:  5'- gGCGAGGaCGuccCCGGcCAGCuugGCGGUGACg -3'
miRNA:   3'- aUGCUCC-GC---GGCCuGUCG---CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 29009 0.72 0.379541
Target:  5'- aACGAcGUGgUGGGCGGCGUGGuCGACg -3'
miRNA:   3'- aUGCUcCGCgGCCUGUCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 130153 0.72 0.379541
Target:  5'- cGCGGGGCccggcggcggGCCGGcccgcgACGGCGCGGaCGAg -3'
miRNA:   3'- aUGCUCCG----------CGGCC------UGUCGCGCC-GCUg -5'
8984 5' -62.9 NC_002512.2 + 12384 0.71 0.387304
Target:  5'- -cCGAGcuCGCCuucGGGCGGCgGCGGCGGCg -3'
miRNA:   3'- auGCUCc-GCGG---CCUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 14497 0.71 0.387304
Target:  5'- gGCGAacauGGUGCCGGGgcUGGCGaCGGCGAa -3'
miRNA:   3'- aUGCU----CCGCGGCCU--GUCGC-GCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 6333 0.71 0.403139
Target:  5'- cGCGGGGgGaCCGGGC-GCGgGGcCGGCg -3'
miRNA:   3'- aUGCUCCgC-GGCCUGuCGCgCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 21064 0.71 0.403139
Target:  5'- cGCGugaGGGCGCaCGGGCGGCggucccgcuccGgGGCGACc -3'
miRNA:   3'- aUGC---UCCGCG-GCCUGUCG-----------CgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 124625 0.71 0.403139
Target:  5'- gGCGucGGCGCCuGGauccgggugcGCGGCGCGGCG-Cu -3'
miRNA:   3'- aUGCu-CCGCGG-CC----------UGUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 153950 0.71 0.406355
Target:  5'- -uCGGGGaCGUCGGguucuucgggguccgGCGGCGcCGGCGGCg -3'
miRNA:   3'- auGCUCC-GCGGCC---------------UGUCGC-GCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.