Results 121 - 140 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8984 | 5' | -62.9 | NC_002512.2 | + | 95247 | 0.7 | 0.479176 |
Target: 5'- gAgGGGGCGuCCGGAgGGC-CGcGCGGCu -3' miRNA: 3'- aUgCUCCGC-GGCCUgUCGcGC-CGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 154804 | 0.7 | 0.479176 |
Target: 5'- aGCGGGaGUGagcgaCGGagGCAGCgGCGGCGGCa -3' miRNA: 3'- aUGCUC-CGCg----GCC--UGUCG-CGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 6406 | 0.7 | 0.435168 |
Target: 5'- aGgGAGGCGgCGG-CGGCGCuggggaaGGCGGCc -3' miRNA: 3'- aUgCUCCGCgGCCuGUCGCG-------CCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 65445 | 0.71 | 0.427646 |
Target: 5'- -cCGAgGGCGCCGaGCGGCuuccCGGCGACc -3' miRNA: 3'- auGCU-CCGCGGCcUGUCGc---GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 6443 | 0.71 | 0.427646 |
Target: 5'- gGCG-GGCGCCGaGACAGgGguCGGcCGGCa -3' miRNA: 3'- aUGCuCCGCGGC-CUGUCgC--GCC-GCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 130153 | 0.72 | 0.379541 |
Target: 5'- cGCGGGGCccggcggcggGCCGGcccgcgACGGCGCGGaCGAg -3' miRNA: 3'- aUGCUCCG----------CGGCC------UGUCGCGCC-GCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 12384 | 0.71 | 0.387304 |
Target: 5'- -cCGAGcuCGCCuucGGGCGGCgGCGGCGGCg -3' miRNA: 3'- auGCUCc-GCGG---CCUGUCG-CGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 14497 | 0.71 | 0.387304 |
Target: 5'- gGCGAacauGGUGCCGGGgcUGGCGaCGGCGAa -3' miRNA: 3'- aUGCU----CCGCGGCCU--GUCGC-GCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 6333 | 0.71 | 0.403139 |
Target: 5'- cGCGGGGgGaCCGGGC-GCGgGGcCGGCg -3' miRNA: 3'- aUGCUCCgC-GGCCUGuCGCgCC-GCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 21064 | 0.71 | 0.403139 |
Target: 5'- cGCGugaGGGCGCaCGGGCGGCggucccgcuccGgGGCGACc -3' miRNA: 3'- aUGC---UCCGCG-GCCUGUCG-----------CgCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 124625 | 0.71 | 0.403139 |
Target: 5'- gGCGucGGCGCCuGGauccgggugcGCGGCGCGGCG-Cu -3' miRNA: 3'- aUGCu-CCGCGG-CC----------UGUCGCGCCGCuG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 153950 | 0.71 | 0.406355 |
Target: 5'- -uCGGGGaCGUCGGguucuucgggguccgGCGGCGcCGGCGGCg -3' miRNA: 3'- auGCUCC-GCGGCC---------------UGUCGC-GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 95956 | 0.69 | 0.487169 |
Target: 5'- gGCGGGGgGCUGaGGCccggguuGGCGCaGCGGCg -3' miRNA: 3'- aUGCUCCgCGGC-CUG-------UCGCGcCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 22986 | 0.71 | 0.411209 |
Target: 5'- gGCGGGaCG-CGGGCGGCGCuGGUGACc -3' miRNA: 3'- aUGCUCcGCgGCCUGUCGCG-CCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 50799 | 0.71 | 0.411209 |
Target: 5'- cACGAGGCGUCGGcccCGGCGCuGUacaGACa -3' miRNA: 3'- aUGCUCCGCGGCCu--GUCGCGcCG---CUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 81947 | 0.71 | 0.411209 |
Target: 5'- gGCgGAGGgGCCGG-C-GCGCGGUGAg -3' miRNA: 3'- aUG-CUCCgCGGCCuGuCGCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 83798 | 0.71 | 0.411209 |
Target: 5'- -cCGAGgaccGCGUCGGGC-GCGcCGGCGGCg -3' miRNA: 3'- auGCUC----CGCGGCCUGuCGC-GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 122790 | 0.71 | 0.419379 |
Target: 5'- -cCGAgGGCGCCGGGCccuG-GCGGCGGg -3' miRNA: 3'- auGCU-CCGCGGCCUGu--CgCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 136186 | 0.71 | 0.426815 |
Target: 5'- gGCGGGGuCGCCGGGaucGCGUcgacgccGGCGGCc -3' miRNA: 3'- aUGCUCC-GCGGCCUgu-CGCG-------CCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 82407 | 0.71 | 0.427646 |
Target: 5'- cGCGGGGgaGCCGGugGuccCGCGGCGGa -3' miRNA: 3'- aUGCUCCg-CGGCCugUc--GCGCCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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