Results 141 - 160 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8984 | 5' | -62.9 | NC_002512.2 | + | 82034 | 0.7 | 0.461648 |
Target: 5'- -uCGGGgucGCGCCGGcgGCGGuCGCGGCGGg -3' miRNA: 3'- auGCUC---CGCGGCC--UGUC-GCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 57927 | 0.7 | 0.461648 |
Target: 5'- cGCGAGGacggcgaGCgGGagauagacgggcGCGGCGCGGCGGg -3' miRNA: 3'- aUGCUCCg------CGgCC------------UGUCGCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 122790 | 0.71 | 0.419379 |
Target: 5'- -cCGAgGGCGCCGGGCccuG-GCGGCGGg -3' miRNA: 3'- auGCU-CCGCGGCCUGu--CgCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 83798 | 0.71 | 0.411209 |
Target: 5'- -cCGAGgaccGCGUCGGGC-GCGcCGGCGGCg -3' miRNA: 3'- auGCUC----CGCGGCCUGuCGC-GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 81947 | 0.71 | 0.411209 |
Target: 5'- gGCgGAGGgGCCGG-C-GCGCGGUGAg -3' miRNA: 3'- aUG-CUCCgCGGCCuGuCGCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 50799 | 0.71 | 0.411209 |
Target: 5'- cACGAGGCGUCGGcccCGGCGCuGUacaGACa -3' miRNA: 3'- aUGCUCCGCGGCCu--GUCGCGcCG---CUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 22986 | 0.71 | 0.411209 |
Target: 5'- gGCGGGaCG-CGGGCGGCGCuGGUGACc -3' miRNA: 3'- aUGCUCcGCgGCCUGUCGCG-CCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 153950 | 0.71 | 0.406355 |
Target: 5'- -uCGGGGaCGUCGGguucuucgggguccgGCGGCGcCGGCGGCg -3' miRNA: 3'- auGCUCC-GCGGCC---------------UGUCGC-GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 124625 | 0.71 | 0.403139 |
Target: 5'- gGCGucGGCGCCuGGauccgggugcGCGGCGCGGCG-Cu -3' miRNA: 3'- aUGCu-CCGCGG-CC----------UGUCGCGCCGCuG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 21064 | 0.71 | 0.403139 |
Target: 5'- cGCGugaGGGCGCaCGGGCGGCggucccgcuccGgGGCGACc -3' miRNA: 3'- aUGC---UCCGCG-GCCUGUCG-----------CgCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 136186 | 0.71 | 0.426815 |
Target: 5'- gGCGGGGuCGCCGGGaucGCGUcgacgccGGCGGCc -3' miRNA: 3'- aUGCUCC-GCGGCCUgu-CGCG-------CCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 82407 | 0.71 | 0.427646 |
Target: 5'- cGCGGGGgaGCCGGugGuccCGCGGCGGa -3' miRNA: 3'- aUGCUCCg-CGGCCugUc--GCGCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 43881 | 0.7 | 0.461648 |
Target: 5'- gGCGuccAGGUGCCGGACgacccaccacGGCGCaGgGACa -3' miRNA: 3'- aUGC---UCCGCGGCCUG----------UCGCGcCgCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 42574 | 0.7 | 0.461648 |
Target: 5'- gGCG-GGCGCCGcGaggcgaGCGGCGgGGCGGa -3' miRNA: 3'- aUGCuCCGCGGC-C------UGUCGCgCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 27598 | 0.7 | 0.444465 |
Target: 5'- gGCGGcacGGCGCCccGGucccACAGCGCGGagaGACg -3' miRNA: 3'- aUGCU---CCGCGG--CC----UGUCGCGCCg--CUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 139249 | 0.7 | 0.436008 |
Target: 5'- cGCGGccgcGGCGCCGGGuCGcgccgcccggcGCGCGGgGGCg -3' miRNA: 3'- aUGCU----CCGCGGCCU-GU-----------CGCGCCgCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 18693 | 0.7 | 0.436008 |
Target: 5'- -uCGuGGGCGgCGGgcaccccgaGCAGgGCGGCGACg -3' miRNA: 3'- auGC-UCCGCgGCC---------UGUCgCGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 6406 | 0.7 | 0.435168 |
Target: 5'- aGgGAGGCGgCGG-CGGCGCuggggaaGGCGGCc -3' miRNA: 3'- aUgCUCCGCgGCCuGUCGCG-------CCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 65445 | 0.71 | 0.427646 |
Target: 5'- -cCGAgGGCGCCGaGCGGCuuccCGGCGACc -3' miRNA: 3'- auGCU-CCGCGGCcUGUCGc---GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 6443 | 0.71 | 0.427646 |
Target: 5'- gGCG-GGCGCCGaGACAGgGguCGGcCGGCa -3' miRNA: 3'- aUGCuCCGCGGC-CUGUCgC--GCC-GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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