miRNA display CGI


Results 61 - 80 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 159108 0.66 0.676001
Target:  5'- gACGAGGaCGaCgGGAUcugccccagaAGCGCGGCcGCu -3'
miRNA:   3'- aUGCUCC-GC-GgCCUG----------UCGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 184624 0.66 0.666479
Target:  5'- cGCGAGccccCGCCGG-CGGcCGaCGGCGAg -3'
miRNA:   3'- aUGCUCc---GCGGCCuGUC-GC-GCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 101776 0.66 0.7137
Target:  5'- gGCGAgacGGCGCCGucCu-CGCGGCGGa -3'
miRNA:   3'- aUGCU---CCGCGGCcuGucGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 103670 0.66 0.712767
Target:  5'- cACGA-GCGCCucgacgucgcagaGGGCGGCggacGCGGCGGg -3'
miRNA:   3'- aUGCUcCGCGG-------------CCUGUCG----CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 158831 0.66 0.704348
Target:  5'- cGgGAGGUGCUgacgcgGGGgAGCGgGGgGACg -3'
miRNA:   3'- aUgCUCCGCGG------CCUgUCGCgCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 115574 0.66 0.704348
Target:  5'- aGCGuGGCGCUGGAgCAccuGCGCcgGGUGuACa -3'
miRNA:   3'- aUGCuCCGCGGCCU-GU---CGCG--CCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 185168 0.66 0.695885
Target:  5'- gGCGcGGCGuCCaGGACuucuucuccgagaaCGCGGCGGCg -3'
miRNA:   3'- aUGCuCCGC-GG-CCUGuc------------GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 143689 0.66 0.694942
Target:  5'- gGCGGGGUGUCGGGCA-CGgagGGcCGACc -3'
miRNA:   3'- aUGCUCCGCGGCCUGUcGCg--CC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 128486 0.66 0.685491
Target:  5'- aGCGAcagcGGuCGgCGGACAGCGCccgGGUGGg -3'
miRNA:   3'- aUGCU----CC-GCgGCCUGUCGCG---CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 228554 0.66 0.684543
Target:  5'- gGCGGacGGCaGCCGGACGcuuccuuaccGCGgucguguCGGCGGCa -3'
miRNA:   3'- aUGCU--CCG-CGGCCUGU----------CGC-------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 220108 0.68 0.580492
Target:  5'- -uCGAGGCGuCCGuGAgccgcCAcGCGgGGCGGCg -3'
miRNA:   3'- auGCUCCGC-GGC-CU-----GU-CGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 200 0.68 0.589995
Target:  5'- --aGGGGC-CCGGGCGGagagggaGCGGgGACc -3'
miRNA:   3'- augCUCCGcGGCCUGUCg------CGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 114324 0.66 0.666479
Target:  5'- gACGGGaGCGUUcuuGACGcGCGCGGCGGg -3'
miRNA:   3'- aUGCUC-CGCGGc--CUGU-CGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 210961 0.67 0.651197
Target:  5'- aACGAGGuCGuCCGGGCccugugucgcgccuGCGUGGCcGCg -3'
miRNA:   3'- aUGCUCC-GC-GGCCUGu-------------CGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 212568 0.67 0.628218
Target:  5'- gACGGGGCGaCGacGACG--GCGGCGACg -3'
miRNA:   3'- aUGCUCCGCgGC--CUGUcgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 130537 0.67 0.628218
Target:  5'- cGCGGGaacaUGCCGGACAG-GCGGUccgaGACg -3'
miRNA:   3'- aUGCUCc---GCGGCCUGUCgCGCCG----CUG- -5'
8984 5' -62.9 NC_002512.2 + 210425 0.67 0.618643
Target:  5'- gGCGAGGU-CCGGGauguGGCGuCGGgGACu -3'
miRNA:   3'- aUGCUCCGcGGCCUg---UCGC-GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 223772 0.67 0.609076
Target:  5'- aGCGAGGUcgaggGaCCGGACGucGCcggggacgucgGCGGCGACc -3'
miRNA:   3'- aUGCUCCG-----C-GGCCUGU--CG-----------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128273 0.67 0.608121
Target:  5'- cGCGucccGGCGCCGGGCcgacGGCcgcccgcacgaccGCGGgGACc -3'
miRNA:   3'- aUGCu---CCGCGGCCUG----UCG-------------CGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 92570 0.68 0.599525
Target:  5'- --gGAGGCGCCGacgccGCGGCcgggaGgGGCGGCg -3'
miRNA:   3'- augCUCCGCGGCc----UGUCG-----CgCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.