miRNA display CGI


Results 81 - 100 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 112148 0.67 0.656933
Target:  5'- gACGAGGCGgUcGACGGCGagcCGGCG-Cu -3'
miRNA:   3'- aUGCUCCGCgGcCUGUCGC---GCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 149364 0.67 0.64737
Target:  5'- gACGGGG-GagaGGACgagGGCGCGGgGACg -3'
miRNA:   3'- aUGCUCCgCgg-CCUG---UCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 203148 0.67 0.628218
Target:  5'- -cCGuGGCGUacaGCGGCGcCGGCGACg -3'
miRNA:   3'- auGCuCCGCGgccUGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 95178 0.67 0.628218
Target:  5'- cACGgcccccAGGaUGUCGGGCAGCcCGGCGAg -3'
miRNA:   3'- aUGC------UCC-GCGGCCUGUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 130784 0.67 0.618643
Target:  5'- cACGAGGagggcCGCCGacgcGCAGCacGCGGUGGCc -3'
miRNA:   3'- aUGCUCC-----GCGGCc---UGUCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128273 0.67 0.608121
Target:  5'- cGCGucccGGCGCCGGGCcgacGGCcgcccgcacgaccGCGGgGACc -3'
miRNA:   3'- aUGCu---CCGCGGCCUG----UCG-------------CGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 92570 0.68 0.599525
Target:  5'- --gGAGGCGCCGacgccGCGGCcgggaGgGGCGGCg -3'
miRNA:   3'- augCUCCGCGGCc----UGUCG-----CgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 228554 0.66 0.684543
Target:  5'- gGCGGacGGCaGCCGGACGcuuccuuaccGCGgucguguCGGCGGCa -3'
miRNA:   3'- aUGCU--CCG-CGGCCUGU----------CGC-------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128486 0.66 0.685491
Target:  5'- aGCGAcagcGGuCGgCGGACAGCGCccgGGUGGg -3'
miRNA:   3'- aUGCU----CC-GCgGCCUGUCGCG---CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 143689 0.66 0.694942
Target:  5'- gGCGGGGUGUCGGGCA-CGgagGGcCGACc -3'
miRNA:   3'- aUGCUCCGCGGCCUGUcGCg--CC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 160837 0.68 0.571021
Target:  5'- gGCG-GGCgGCCGG-CGGCGCugGGCG-Ca -3'
miRNA:   3'- aUGCuCCG-CGGCCuGUCGCG--CCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 217108 0.68 0.561588
Target:  5'- aGCgGGGGCGCCGccgAGUccuGCGGCGGCa -3'
miRNA:   3'- aUG-CUCCGCGGCcugUCG---CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 227945 0.68 0.552198
Target:  5'- gACGAGGCG--GGGgAGCGCGGgGGa -3'
miRNA:   3'- aUGCUCCGCggCCUgUCGCGCCgCUg -5'
8984 5' -62.9 NC_002512.2 + 126330 0.68 0.551262
Target:  5'- gACGAGGcCGCCgcguccgGGACgGGCGCGcaCGACg -3'
miRNA:   3'- aUGCUCC-GCGG-------CCUG-UCGCGCc-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 164572 0.69 0.533566
Target:  5'- aGCGgcaAGGCGuacuCCGGGgAGgaCGCGGCGGCg -3'
miRNA:   3'- aUGC---UCCGC----GGCCUgUC--GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 101776 0.66 0.7137
Target:  5'- gGCGAgacGGCGCCGucCu-CGCGGCGGa -3'
miRNA:   3'- aUGCU---CCGCGGCcuGucGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 103670 0.66 0.712767
Target:  5'- cACGA-GCGCCucgacgucgcagaGGGCGGCggacGCGGCGGg -3'
miRNA:   3'- aUGCUcCGCGG-------------CCUGUCG----CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 158831 0.66 0.704348
Target:  5'- cGgGAGGUGCUgacgcgGGGgAGCGgGGgGACg -3'
miRNA:   3'- aUgCUCCGCGG------CCUgUCGCgCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 115574 0.66 0.704348
Target:  5'- aGCGuGGCGCUGGAgCAccuGCGCcgGGUGuACa -3'
miRNA:   3'- aUGCuCCGCGGCCU-GU---CGCG--CCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 185168 0.66 0.695885
Target:  5'- gGCGcGGCGuCCaGGACuucuucuccgagaaCGCGGCGGCg -3'
miRNA:   3'- aUGCuCCGC-GG-CCUGuc------------GCGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.