miRNA display CGI


Results 101 - 120 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 101898 0.68 0.552198
Target:  5'- cGCGGGGaCGCCgacggGGGCGGCguguucuccauGCGGgGACc -3'
miRNA:   3'- aUGCUCC-GCGG-----CCUGUCG-----------CGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 227998 0.69 0.533566
Target:  5'- -cCGAGGgccggaGCCGGACGGgaCGCGG-GACg -3'
miRNA:   3'- auGCUCCg-----CGGCCUGUC--GCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 184447 0.69 0.524334
Target:  5'- ----cGGCGUCGGACAGggagucgcCGCGGcCGGCg -3'
miRNA:   3'- augcuCCGCGGCCUGUC--------GCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 188507 0.69 0.506059
Target:  5'- aACGAGGUGUCcuACgAGCGCGGCGuCc -3'
miRNA:   3'- aUGCUCCGCGGccUG-UCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 132717 0.69 0.488061
Target:  5'- gGCGAGauccucggcccGUGCCGcaggcGCAGCGCGGCGuCg -3'
miRNA:   3'- aUGCUC-----------CGCGGCc----UGUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 95178 0.67 0.628218
Target:  5'- cACGgcccccAGGaUGUCGGGCAGCcCGGCGAg -3'
miRNA:   3'- aUGC------UCC-GCGGCCUGUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 203148 0.67 0.628218
Target:  5'- -cCGuGGCGUacaGCGGCGcCGGCGACg -3'
miRNA:   3'- auGCuCCGCGgccUGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 101776 0.66 0.7137
Target:  5'- gGCGAgacGGCGCCGucCu-CGCGGCGGa -3'
miRNA:   3'- aUGCU---CCGCGGCcuGucGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 103670 0.66 0.712767
Target:  5'- cACGA-GCGCCucgacgucgcagaGGGCGGCggacGCGGCGGg -3'
miRNA:   3'- aUGCUcCGCGG-------------CCUGUCG----CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 158831 0.66 0.704348
Target:  5'- cGgGAGGUGCUgacgcgGGGgAGCGgGGgGACg -3'
miRNA:   3'- aUgCUCCGCGG------CCUgUCGCgCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 115574 0.66 0.704348
Target:  5'- aGCGuGGCGCUGGAgCAccuGCGCcgGGUGuACa -3'
miRNA:   3'- aUGCuCCGCGGCCU-GU---CGCG--CCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 185168 0.66 0.695885
Target:  5'- gGCGcGGCGuCCaGGACuucuucuccgagaaCGCGGCGGCg -3'
miRNA:   3'- aUGCuCCGC-GG-CCUGuc------------GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 143689 0.66 0.694942
Target:  5'- gGCGGGGUGUCGGGCA-CGgagGGcCGACc -3'
miRNA:   3'- aUGCUCCGCGGCCUGUcGCg--CC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 128486 0.66 0.685491
Target:  5'- aGCGAcagcGGuCGgCGGACAGCGCccgGGUGGg -3'
miRNA:   3'- aUGCU----CC-GCgGCCUGUCGCG---CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 228554 0.66 0.684543
Target:  5'- gGCGGacGGCaGCCGGACGcuuccuuaccGCGgucguguCGGCGGCa -3'
miRNA:   3'- aUGCU--CCG-CGGCCUGU----------CGC-------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 114181 0.66 0.676001
Target:  5'- -uCGGuGGCGCCGGcgucgGGCcCGGCGGCc -3'
miRNA:   3'- auGCU-CCGCGGCCug---UCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 182999 0.66 0.666479
Target:  5'- -uUGAGGaaaCGgCGGAU-GCGCGGCGAg -3'
miRNA:   3'- auGCUCC---GCgGCCUGuCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 168141 0.66 0.666479
Target:  5'- gGCGAGGgGCUGGGgGuGgGgGGCGGa -3'
miRNA:   3'- aUGCUCCgCGGCCUgU-CgCgCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 112148 0.67 0.656933
Target:  5'- gACGAGGCGgUcGACGGCGagcCGGCG-Cu -3'
miRNA:   3'- aUGCUCCGCgGcCUGUCGC---GCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 149364 0.67 0.64737
Target:  5'- gACGGGG-GagaGGACgagGGCGCGGgGACg -3'
miRNA:   3'- aUGCUCCgCgg-CCUG---UCGCGCCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.