miRNA display CGI


Results 121 - 140 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 221276 0.66 0.694942
Target:  5'- cGCGGGGCGCgUGGAgGGgGgGGaGGCc -3'
miRNA:   3'- aUGCUCCGCG-GCCUgUCgCgCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 219705 0.66 0.685491
Target:  5'- aGCGucGGCGCUcgGGGC-GCGagaGGCGGCc -3'
miRNA:   3'- aUGCu-CCGCGG--CCUGuCGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 87670 0.69 0.506059
Target:  5'- cGCGaAGGCGacgacgucgagaCCgacgGGAC-GCGCGGCGACg -3'
miRNA:   3'- aUGC-UCCGC------------GG----CCUGuCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128418 0.69 0.533566
Target:  5'- gGCGGGGuCGCCGGAgcccuccucGCG-GGCGGCc -3'
miRNA:   3'- aUGCUCC-GCGGCCUgu-------CGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 198156 0.68 0.542856
Target:  5'- cGCGGgccgggucGGCGCCGGcCGGCGgaccuccacguCGGCGAa -3'
miRNA:   3'- aUGCU--------CCGCGGCCuGUCGC-----------GCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 188782 0.66 0.67505
Target:  5'- gGCGGcGGCuCCGGccucgGCGGCcccgaucGCGGCGGCu -3'
miRNA:   3'- aUGCU-CCGcGGCC-----UGUCG-------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 106767 0.66 0.666479
Target:  5'- cGgGAcGGcCGCC-GACGGCGCGG-GACg -3'
miRNA:   3'- aUgCU-CC-GCGGcCUGUCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 114324 0.66 0.666479
Target:  5'- gACGGGaGCGUUcuuGACGcGCGCGGCGGg -3'
miRNA:   3'- aUGCUC-CGCGGc--CUGU-CGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 221037 0.67 0.64737
Target:  5'- aACGGGGUGCCGcccGGCAGCgagcccgucugGCccaagcuccGGCGGCg -3'
miRNA:   3'- aUGCUCCGCGGC---CUGUCG-----------CG---------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 212568 0.67 0.628218
Target:  5'- gACGGGGCGaCGacGACG--GCGGCGACg -3'
miRNA:   3'- aUGCUCCGCgGC--CUGUcgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 97819 0.67 0.628218
Target:  5'- -cCGGGGaCGCggaguagaGGGCGGCGCgggggaagcggaGGCGACg -3'
miRNA:   3'- auGCUCC-GCGg-------CCUGUCGCG------------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 210425 0.67 0.618643
Target:  5'- gGCGAGGU-CCGGGauguGGCGuCGGgGACu -3'
miRNA:   3'- aUGCUCCGcGGCCUg---UCGC-GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 204804 0.67 0.609076
Target:  5'- cGgGAGGUccgcgucCCGGG-GGCGCGGCGGCu -3'
miRNA:   3'- aUgCUCCGc------GGCCUgUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128273 0.67 0.608121
Target:  5'- cGCGucccGGCGCCGGGCcgacGGCcgcccgcacgaccGCGGgGACc -3'
miRNA:   3'- aUGCu---CCGCGGCCUG----UCG-------------CGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 92635 0.68 0.589995
Target:  5'- gGCGGccgccGGCGCCGGGacccGCGCGGauccggGACg -3'
miRNA:   3'- aUGCU-----CCGCGGCCUgu--CGCGCCg-----CUG- -5'
8984 5' -62.9 NC_002512.2 + 200 0.68 0.589995
Target:  5'- --aGGGGC-CCGGGCGGagagggaGCGGgGACc -3'
miRNA:   3'- augCUCCGcGGCCUGUCg------CGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 211329 0.68 0.571021
Target:  5'- gGCGguccgggcccGGGCGCUgggGGACGcGCGCGGCcuGACc -3'
miRNA:   3'- aUGC----------UCCGCGG---CCUGU-CGCGCCG--CUG- -5'
8984 5' -62.9 NC_002512.2 + 89522 0.68 0.571021
Target:  5'- gACcAGGUGCCGGuuguCGGCGCGGaUGuACu -3'
miRNA:   3'- aUGcUCCGCGGCCu---GUCGCGCC-GC-UG- -5'
8984 5' -62.9 NC_002512.2 + 148446 0.68 0.561588
Target:  5'- gACGGGG-GCCGGGCccccCGCGG-GACg -3'
miRNA:   3'- aUGCUCCgCGGCCUGuc--GCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 220334 0.68 0.552198
Target:  5'- -cCGGGGgGCCGGACGGCcucgucaacgccGUGGCcguGGCc -3'
miRNA:   3'- auGCUCCgCGGCCUGUCG------------CGCCG---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.