miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 115773 0.67 0.871366
Target:  5'- --cGGUGGCCGUgcCgugCUACugCGACGa -3'
miRNA:   3'- gcuCCGCCGGCA--Gaa-GGUGugGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 120779 0.67 0.871366
Target:  5'- --cGGCGGCCGUCggCgGgGgCGGCGg -3'
miRNA:   3'- gcuCCGCCGGCAGaaGgUgUgGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 10649 0.67 0.878246
Target:  5'- aGAGGCGGCCGagcacgaUCCcgaccuCGCCGAg- -3'
miRNA:   3'- gCUCCGCCGGCaga----AGGu-----GUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 98348 0.67 0.878246
Target:  5'- gGGGGCGGCCccuccgccucGUCUcCCu--CCGGCGu -3'
miRNA:   3'- gCUCCGCCGG----------CAGAaGGuguGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 98010 0.67 0.864292
Target:  5'- aCGugcuGGUGGCCGUCcugaUCCGC-CgCGGCGu -3'
miRNA:   3'- -GCu---CCGCCGGCAGa---AGGUGuG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 99109 0.67 0.857029
Target:  5'- --cGGCGGCCcuccUCguggUCCGCGCCGcgGCGa -3'
miRNA:   3'- gcuCCGCCGGc---AGa---AGGUGUGGC--UGU- -5'
8985 3' -58.5 NC_002512.2 + 153276 0.67 0.852582
Target:  5'- gCGAuGGCGGCCccggacagacgUCCgACGCCGGCGu -3'
miRNA:   3'- -GCU-CCGCCGGcaga-------AGG-UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 105617 0.67 0.864292
Target:  5'- cCGAGGCaccGGCCGUCgucggucUCCGagacCCGGCc -3'
miRNA:   3'- -GCUCCG---CCGGCAGa------AGGUgu--GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 92733 0.67 0.864292
Target:  5'- gGGGGCGcGCuCGg--UCCgaugGCGCCGACGa -3'
miRNA:   3'- gCUCCGC-CG-GCagaAGG----UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 220214 0.67 0.864292
Target:  5'- cCGAcGGCGGCCcgggggacgaGUgCgcccgCCugGCCGACAu -3'
miRNA:   3'- -GCU-CCGCCGG----------CA-Gaa---GGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 207523 0.67 0.864292
Target:  5'- aCGAGGacggGGCCGcgucCUcCCGCugCGACu -3'
miRNA:   3'- -GCUCCg---CCGGCa---GAaGGUGugGCUGu -5'
8985 3' -58.5 NC_002512.2 + 96508 0.67 0.878246
Target:  5'- -cGGGCGaccGCCGgagggagCCGCGCCGGCGg -3'
miRNA:   3'- gcUCCGC---CGGCagaa---GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 199090 0.67 0.878246
Target:  5'- cCGAGGUGGCCGcCaggUCCACguucACCcucuGCAg -3'
miRNA:   3'- -GCUCCGCCGGCaGa--AGGUG----UGGc---UGU- -5'
8985 3' -58.5 NC_002512.2 + 185198 0.67 0.864292
Target:  5'- aCGcGGCGGCgGUCgacgCCGCGgUGGCc -3'
miRNA:   3'- -GCuCCGCCGgCAGaa--GGUGUgGCUGu -5'
8985 3' -58.5 NC_002512.2 + 92594 0.67 0.878246
Target:  5'- aGGGGCGGCgGUCccgaggCCGguCgCGACGa -3'
miRNA:   3'- gCUCCGCCGgCAGaa----GGUguG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 157060 0.67 0.871366
Target:  5'- -aAGGCGGgCGUCccggggUCCGggguCGCCGGCGc -3'
miRNA:   3'- gcUCCGCCgGCAGa-----AGGU----GUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 68902 0.67 0.841957
Target:  5'- cCGGGGCGGUCGUgCUgcuggCCGC-CgCGGCc -3'
miRNA:   3'- -GCUCCGCCGGCA-GAa----GGUGuG-GCUGu -5'
8985 3' -58.5 NC_002512.2 + 99409 0.67 0.841957
Target:  5'- cCGGGGCGGCuuCGUCU-CCGCcCCcGCu -3'
miRNA:   3'- -GCUCCGCCG--GCAGAaGGUGuGGcUGu -5'
8985 3' -58.5 NC_002512.2 + 84643 0.67 0.849582
Target:  5'- aGGcGGCGGCCcaggaaguUCUcgUCGCGCCGGCAc -3'
miRNA:   3'- gCU-CCGCCGGc-------AGAa-GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 6316 0.67 0.849582
Target:  5'- uCGAGGUGGCCGcCgcCCGCggggggACCGGg- -3'
miRNA:   3'- -GCUCCGCCGGCaGaaGGUG------UGGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.