miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 96508 0.67 0.878246
Target:  5'- -cGGGCGaccGCCGgagggagCCGCGCCGGCGg -3'
miRNA:   3'- gcUCCGC---CGGCagaa---GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 98583 0.67 0.857029
Target:  5'- -cGGGCGGCgGgUCgUCCGCGCUGcACGu -3'
miRNA:   3'- gcUCCGCCGgC-AGaAGGUGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 217681 0.67 0.841957
Target:  5'- cCGGGcGCuugGGCUGgcUCUUCCcCGCCGGCGu -3'
miRNA:   3'- -GCUC-CG---CCGGC--AGAAGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 91869 0.67 0.849582
Target:  5'- cCGAGGCcGCCGUC--CgGCGCgGGCGg -3'
miRNA:   3'- -GCUCCGcCGGCAGaaGgUGUGgCUGU- -5'
8985 3' -58.5 NC_002512.2 + 6316 0.67 0.849582
Target:  5'- uCGAGGUGGCCGcCgcCCGCggggggACCGGg- -3'
miRNA:   3'- -GCUCCGCCGGCaGaaGGUG------UGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 84643 0.67 0.849582
Target:  5'- aGGcGGCGGCCcaggaaguUCUcgUCGCGCCGGCAc -3'
miRNA:   3'- gCU-CCGCCGGc-------AGAa-GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 99409 0.67 0.841957
Target:  5'- cCGGGGCGGCuuCGUCU-CCGCcCCcGCu -3'
miRNA:   3'- -GCUCCGCCG--GCAGAaGGUGuGGcUGu -5'
8985 3' -58.5 NC_002512.2 + 116672 0.67 0.841957
Target:  5'- uCGuGGCGGaCCG-CgagCCGCugGCCGACGc -3'
miRNA:   3'- -GCuCCGCC-GGCaGaa-GGUG--UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 68902 0.67 0.841957
Target:  5'- cCGGGGCGGUCGUgCUgcuggCCGC-CgCGGCc -3'
miRNA:   3'- -GCUCCGCCGGCA-GAa----GGUGuG-GCUGu -5'
8985 3' -58.5 NC_002512.2 + 98682 0.68 0.837299
Target:  5'- uCGAGcGCcuGGCCGcgcacgacuacgcgcUCUUCCACugCGAgAa -3'
miRNA:   3'- -GCUC-CG--CCGGC---------------AGAAGGUGugGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 103219 0.68 0.818073
Target:  5'- cCGAGGCGGCucgCGUCg-CCGCccgUCGACGg -3'
miRNA:   3'- -GCUCCGCCG---GCAGaaGGUGu--GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 47457 0.68 0.818073
Target:  5'- gGAGGCcgaGGCCGagUUCCGCAa-GGCGg -3'
miRNA:   3'- gCUCCG---CCGGCagAAGGUGUggCUGU- -5'
8985 3' -58.5 NC_002512.2 + 12304 0.68 0.834159
Target:  5'- cCGAGGCGGCg--CcgCCGgACCGGCu -3'
miRNA:   3'- -GCUCCGCCGgcaGaaGGUgUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 7760 0.68 0.834159
Target:  5'- cCGGGGCGGuaGUCggCCGCGgaGAUg -3'
miRNA:   3'- -GCUCCGCCggCAGaaGGUGUggCUGu -5'
8985 3' -58.5 NC_002512.2 + 136187 0.68 0.834159
Target:  5'- gCGGGGUcGCCGggaUCgcgUCgACGCCGGCGg -3'
miRNA:   3'- -GCUCCGcCGGC---AGa--AGgUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 101656 0.68 0.834159
Target:  5'- gCGcGGCGGCCG-CggacgCCGgGCCGAUc -3'
miRNA:   3'- -GCuCCGCCGGCaGaa---GGUgUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 53864 0.68 0.792816
Target:  5'- aGAGGgGGaCCGUCcgUUCCccagGgACCGACGg -3'
miRNA:   3'- gCUCCgCC-GGCAG--AAGG----UgUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 81610 0.68 0.808962
Target:  5'- uGAGGUgcucgucggccagGGCCGUCgccacgUCCAgGCuCGGCGc -3'
miRNA:   3'- gCUCCG-------------CCGGCAGa-----AGGUgUG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 135680 0.68 0.809797
Target:  5'- gGAGGCGGCgCucagCgaCCGCAUCGACu -3'
miRNA:   3'- gCUCCGCCG-Gca--GaaGGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 37273 0.68 0.818073
Target:  5'- uGAGGCcGCCGUCgcCCGC-CgCGGCGc -3'
miRNA:   3'- gCUCCGcCGGCAGaaGGUGuG-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.