Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 146723 | 0.68 | 0.801376 |
Target: 5'- gCGGGGCGGCgGcCgcggCCGCcgggcCCGACGa -3' miRNA: 3'- -GCUCCGCCGgCaGaa--GGUGu----GGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 166299 | 0.68 | 0.792816 |
Target: 5'- aCGAGGCGGCCGcgUCgcccaaCCugGCCa--- -3' miRNA: 3'- -GCUCCGCCGGC--AGaa----GGugUGGcugu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 123414 | 0.68 | 0.825391 |
Target: 5'- gCGAGGCGGUCGaggUCC-CGCCGcccgugcGCAg -3' miRNA: 3'- -GCUCCGCCGGCagaAGGuGUGGC-------UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 118077 | 0.68 | 0.826196 |
Target: 5'- gGAGGgGGCgG-CUcCgGCGCCGGCGg -3' miRNA: 3'- gCUCCgCCGgCaGAaGgUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 152740 | 0.68 | 0.826196 |
Target: 5'- gGGGGCGGUCGgaaggUCC-C-CCGACGg -3' miRNA: 3'- gCUCCGCCGGCaga--AGGuGuGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 10162 | 0.68 | 0.826196 |
Target: 5'- gCGAGGCacgggGGCCGccUCUcgcgCCccgaGCGCCGACGc -3' miRNA: 3'- -GCUCCG-----CCGGC--AGAa---GG----UGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 101656 | 0.68 | 0.834159 |
Target: 5'- gCGcGGCGGCCG-CggacgCCGgGCCGAUc -3' miRNA: 3'- -GCuCCGCCGGCaGaa---GGUgUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 136187 | 0.68 | 0.834159 |
Target: 5'- gCGGGGUcGCCGggaUCgcgUCgACGCCGGCGg -3' miRNA: 3'- -GCUCCGcCGGC---AGa--AGgUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 7760 | 0.68 | 0.834159 |
Target: 5'- cCGGGGCGGuaGUCggCCGCGgaGAUg -3' miRNA: 3'- -GCUCCGCCggCAGaaGGUGUggCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 12304 | 0.68 | 0.834159 |
Target: 5'- cCGAGGCGGCg--CcgCCGgACCGGCu -3' miRNA: 3'- -GCUCCGCCGgcaGaaGGUgUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 103219 | 0.68 | 0.818073 |
Target: 5'- cCGAGGCGGCucgCGUCg-CCGCccgUCGACGg -3' miRNA: 3'- -GCUCCGCCG---GCAGaaGGUGu--GGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 47457 | 0.68 | 0.818073 |
Target: 5'- gGAGGCcgaGGCCGagUUCCGCAa-GGCGg -3' miRNA: 3'- gCUCCG---CCGGCagAAGGUGUggCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 160903 | 0.68 | 0.791088 |
Target: 5'- gCGGGGCGGCCGgggcaagggacgCggacagUCGCugCGGCGg -3' miRNA: 3'- -GCUCCGCCGGCa-----------Gaa----GGUGugGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 98682 | 0.68 | 0.837299 |
Target: 5'- uCGAGcGCcuGGCCGcgcacgacuacgcgcUCUUCCACugCGAgAa -3' miRNA: 3'- -GCUC-CG--CCGGC---------------AGAAGGUGugGCUgU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 53864 | 0.68 | 0.792816 |
Target: 5'- aGAGGgGGaCCGUCcgUUCCccagGgACCGACGg -3' miRNA: 3'- gCUCCgCC-GGCAG--AAGG----UgUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 81610 | 0.68 | 0.808962 |
Target: 5'- uGAGGUgcucgucggccagGGCCGUCgccacgUCCAgGCuCGGCGc -3' miRNA: 3'- gCUCCG-------------CCGGCAGa-----AGGUgUG-GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 135680 | 0.68 | 0.809797 |
Target: 5'- gGAGGCGGCgCucagCgaCCGCAUCGACu -3' miRNA: 3'- gCUCCGCCG-Gca--GaaGGUGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 37273 | 0.68 | 0.818073 |
Target: 5'- uGAGGCcGCCGUCgcCCGC-CgCGGCGc -3' miRNA: 3'- gCUCCGcCGGCAGaaGGUGuG-GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 134170 | 0.69 | 0.784125 |
Target: 5'- aCGGGGa-GCCGUCUUCCcCucCCGGCc -3' miRNA: 3'- -GCUCCgcCGGCAGAAGGuGu-GGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 1976 | 0.69 | 0.775311 |
Target: 5'- gGAGGCGGCgCGUCcgucUCCGCcuCgGACu -3' miRNA: 3'- gCUCCGCCG-GCAGa---AGGUGu-GgCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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