Results 101 - 120 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 108655 | 0.69 | 0.748205 |
Target: 5'- aCGGGGCGGUCcacauGUacUCCcCGCCGACGa -3' miRNA: 3'- -GCUCCGCCGG-----CAgaAGGuGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 108460 | 0.69 | 0.748205 |
Target: 5'- cCGGGGCcgacuccgcGGgCGUCUcccUCCACGCCaGGCGc -3' miRNA: 3'- -GCUCCG---------CCgGCAGA---AGGUGUGG-CUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 212362 | 0.69 | 0.784125 |
Target: 5'- gCGAGcUGGCCGcCUacgCCgACGCCGACGu -3' miRNA: 3'- -GCUCcGCCGGCaGAa--GG-UGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 175775 | 0.69 | 0.784125 |
Target: 5'- gCGGGGUGGUcaCGUCg--CAgGCCGACAg -3' miRNA: 3'- -GCUCCGCCG--GCAGaagGUgUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 1976 | 0.69 | 0.775311 |
Target: 5'- gGAGGCGGCgCGUCcgucUCCGCcuCgGACu -3' miRNA: 3'- gCUCCGCCG-GCAGa---AGGUGu-GgCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 225439 | 0.69 | 0.766381 |
Target: 5'- uGAGGCGGaCGauggCUUCCGUACCGaACAc -3' miRNA: 3'- gCUCCGCCgGCa---GAAGGUGUGGC-UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 133655 | 0.69 | 0.756433 |
Target: 5'- cCGGGGCGGUCGcCgccgCCGCcgcggccgccgugGCCGACc -3' miRNA: 3'- -GCUCCGCCGGCaGaa--GGUG-------------UGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 124081 | 0.69 | 0.742677 |
Target: 5'- gGGGGCuucuccGCCGUCUUcgcccucgccgucgaCCAUGCCGACGc -3' miRNA: 3'- gCUCCGc-----CGGCAGAA---------------GGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 124928 | 0.69 | 0.748205 |
Target: 5'- aCGAGaGacacgaGGCCGgcg-CCGCGCCGACGc -3' miRNA: 3'- -GCUC-Cg-----CCGGCagaaGGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 96268 | 0.69 | 0.784125 |
Target: 5'- aCGAGGCGacgaucgaGCCGUaggUCCGCaggagGCCGGCc -3' miRNA: 3'- -GCUCCGC--------CGGCAga-AGGUG-----UGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 157822 | 0.69 | 0.775311 |
Target: 5'- gGGGGcCGGCCGcgacCUUCUACAagCGGCAc -3' miRNA: 3'- gCUCC-GCCGGCa---GAAGGUGUg-GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 226685 | 0.69 | 0.757343 |
Target: 5'- uGAGcGCcgGGCCGUCgcCCGCGgCGGCGu -3' miRNA: 3'- gCUC-CG--CCGGCAGaaGGUGUgGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 192686 | 0.69 | 0.76097 |
Target: 5'- gGAGGUguggcggcgcgccgaGGCCGUCUUCUACuucuCCGcCGc -3' miRNA: 3'- gCUCCG---------------CCGGCAGAAGGUGu---GGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 201797 | 0.69 | 0.775311 |
Target: 5'- aCGGGGCGgcgaccucuccGCCGUCUccgCCGCGCCcgggGGCu -3' miRNA: 3'- -GCUCCGC-----------CGGCAGAa--GGUGUGG----CUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 151073 | 0.69 | 0.775311 |
Target: 5'- gGGGGauGCgGUCUcggUCCGCGCCGGa- -3' miRNA: 3'- gCUCCgcCGgCAGA---AGGUGUGGCUgu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 197153 | 0.69 | 0.766381 |
Target: 5'- -aAGGUcgccacGGCCGUCUUCCAC-CCG-CGc -3' miRNA: 3'- gcUCCG------CCGGCAGAAGGUGuGGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 65426 | 0.7 | 0.69172 |
Target: 5'- -cGGGCGGUCGUCgcCCcCGCCGAgGg -3' miRNA: 3'- gcUCCGCCGGCAGaaGGuGUGGCUgU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 82012 | 0.7 | 0.714603 |
Target: 5'- uCGcGGCGaGCCGUCgcccgggucggggUCGCGCCGGCGg -3' miRNA: 3'- -GCuCCGC-CGGCAGaa-----------GGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 135325 | 0.7 | 0.69172 |
Target: 5'- cCGAGGuCGG-CGUCagCCGCGCCGGg- -3' miRNA: 3'- -GCUCC-GCCgGCAGaaGGUGUGGCUgu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 79940 | 0.7 | 0.69172 |
Target: 5'- cCGAGGCGGCgCGggggUCCGCcuGCCGuCGg -3' miRNA: 3'- -GCUCCGCCG-GCaga-AGGUG--UGGCuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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