miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 219726 0.71 0.623881
Target:  5'- aGAGGCGGCCccCgugCCuCGCCGACc -3'
miRNA:   3'- gCUCCGCCGGcaGaa-GGuGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 10553 0.71 0.623881
Target:  5'- -cGGGCaGCCGgCgggCCACGCCGACGc -3'
miRNA:   3'- gcUCCGcCGGCaGaa-GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 101913 0.71 0.623881
Target:  5'- gGGGGCGGCgUGUUcUCCAUgcggggACCGACGg -3'
miRNA:   3'- gCUCCGCCG-GCAGaAGGUG------UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 214457 0.71 0.633611
Target:  5'- gCGAGGacgaGGCCGUCUacugcuUCCAC-CgCGGCGu -3'
miRNA:   3'- -GCUCCg---CCGGCAGA------AGGUGuG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 215648 0.71 0.637503
Target:  5'- uGGGGCugcgGGCCGUCaagaagugcuaccgcUUCCGuCACCGGCu -3'
miRNA:   3'- gCUCCG----CCGGCAG---------------AAGGU-GUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 195137 0.71 0.67245
Target:  5'- aGAGGCGG-UGUCgcgacaGCACCGACAc -3'
miRNA:   3'- gCUCCGCCgGCAGaagg--UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 143898 0.71 0.633611
Target:  5'- uCGAGGCuGUCGUCgUCCGagagggcgaacuCGCCGACGa -3'
miRNA:   3'- -GCUCCGcCGGCAGaAGGU------------GUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 83989 0.71 0.633611
Target:  5'- gCGGGGCGGUCGcgcagCUucaggUCCAgguCGCCGACGa -3'
miRNA:   3'- -GCUCCGCCGGCa----GA-----AGGU---GUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 226096 0.71 0.67245
Target:  5'- gGAGGCGucGCCGUCUucaUCUGCugCGuCAg -3'
miRNA:   3'- gCUCCGC--CGGCAGA---AGGUGugGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 65426 0.7 0.69172
Target:  5'- -cGGGCGGUCGUCgcCCcCGCCGAgGg -3'
miRNA:   3'- gcUCCGCCGGCAGaaGGuGUGGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 220388 0.7 0.701292
Target:  5'- uGGGGcCGGCCGUCgUCUAC-CCGcCGc -3'
miRNA:   3'- gCUCC-GCCGGCAGaAGGUGuGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 135325 0.7 0.69172
Target:  5'- cCGAGGuCGG-CGUCagCCGCGCCGGg- -3'
miRNA:   3'- -GCUCC-GCCgGCAGaaGGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 209032 0.7 0.682104
Target:  5'- gCGGGGCGGCCG-CgUCCcggaGCGauuCCGACGg -3'
miRNA:   3'- -GCUCCGCCGGCaGaAGG----UGU---GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 189760 0.7 0.682104
Target:  5'- uCGAGGCGGgggacaaaauCCGUCcUCC-CGCCGuACGa -3'
miRNA:   3'- -GCUCCGCC----------GGCAGaAGGuGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 79940 0.7 0.69172
Target:  5'- cCGAGGCGGCgCGggggUCCGCcuGCCGuCGg -3'
miRNA:   3'- -GCUCCGCCG-GCaga-AGGUG--UGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 165982 0.7 0.701292
Target:  5'- gCGGGGCGGUCGguUCUUCguCAacucucCCGACGg -3'
miRNA:   3'- -GCUCCGCCGGC--AGAAGguGU------GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 82012 0.7 0.714603
Target:  5'- uCGcGGCGaGCCGUCgcccgggucggggUCGCGCCGGCGg -3'
miRNA:   3'- -GCuCCGC-CGGCAGaa-----------GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 207493 0.7 0.72027
Target:  5'- --cGGCGcCCGUCUccggaUCCGCgACCGACGa -3'
miRNA:   3'- gcuCCGCcGGCAGA-----AGGUG-UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 169025 0.7 0.729661
Target:  5'- -cGGGCGGgCGUCcgcgagCgGCGCCGGCAu -3'
miRNA:   3'- gcUCCGCCgGCAGaa----GgUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 185387 0.7 0.729661
Target:  5'- gCGGcGGCugcgaGGCCGUCUucUCCGC-CCGGCc -3'
miRNA:   3'- -GCU-CCG-----CCGGCAGA--AGGUGuGGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.