miRNA display CGI


Results 41 - 60 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 69081 0.7 0.69268
Target:  5'- cCGGGGCGGCUGguacugcugccguggCUgcugCUGCGCCGGCc -3'
miRNA:   3'- -GCUCCGCCGGCa--------------GAa---GGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 79940 0.7 0.69172
Target:  5'- cCGAGGCGGCgCGggggUCCGCcuGCCGuCGg -3'
miRNA:   3'- -GCUCCGCCG-GCaga-AGGUG--UGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 147642 0.7 0.72027
Target:  5'- aCGGcGGCGGCCG-CUcCCGCuACCGuCAc -3'
miRNA:   3'- -GCU-CCGCCGGCaGAaGGUG-UGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 189760 0.7 0.682104
Target:  5'- uCGAGGCGGgggacaaaauCCGUCcUCC-CGCCGuACGa -3'
miRNA:   3'- -GCUCCGCC----------GGCAGaAGGuGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 185387 0.7 0.729661
Target:  5'- gCGGcGGCugcgaGGCCGUCUucUCCGC-CCGGCc -3'
miRNA:   3'- -GCU-CCG-----CCGGCAGA--AGGUGuGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 122103 0.7 0.72027
Target:  5'- gCGAGGuCGGCgcugaCGUCggCCGCGCUgGACAg -3'
miRNA:   3'- -GCUCC-GCCG-----GCAGaaGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 135325 0.7 0.69172
Target:  5'- cCGAGGuCGG-CGUCagCCGCGCCGGg- -3'
miRNA:   3'- -GCUCC-GCCgGCAGaaGGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 103441 0.7 0.710811
Target:  5'- -aAGGCGGCCG-CcgCCGuCGCCGGCc -3'
miRNA:   3'- gcUCCGCCGGCaGaaGGU-GUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 169025 0.7 0.729661
Target:  5'- -cGGGCGGgCGUCcgcgagCgGCGCCGGCAu -3'
miRNA:   3'- gcUCCGCCgGCAGaa----GgUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 201883 0.69 0.784125
Target:  5'- aCGGcGGCGGCuucucCGUCUccCCGCGCCGGa- -3'
miRNA:   3'- -GCU-CCGCCG-----GCAGAa-GGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 175775 0.69 0.784125
Target:  5'- gCGGGGUGGUcaCGUCg--CAgGCCGACAg -3'
miRNA:   3'- -GCUCCGCCG--GCAGaagGUgUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 201797 0.69 0.775311
Target:  5'- aCGGGGCGgcgaccucuccGCCGUCUccgCCGCGCCcgggGGCu -3'
miRNA:   3'- -GCUCCGC-----------CGGCAGAa--GGUGUGG----CUGu -5'
8985 3' -58.5 NC_002512.2 + 96268 0.69 0.784125
Target:  5'- aCGAGGCGacgaucgaGCCGUaggUCCGCaggagGCCGGCc -3'
miRNA:   3'- -GCUCCGC--------CGGCAga-AGGUG-----UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 124081 0.69 0.742677
Target:  5'- gGGGGCuucuccGCCGUCUUcgcccucgccgucgaCCAUGCCGACGc -3'
miRNA:   3'- gCUCCGc-----CGGCAGAA---------------GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 133655 0.69 0.756433
Target:  5'- cCGGGGCGGUCGcCgccgCCGCcgcggccgccgugGCCGACc -3'
miRNA:   3'- -GCUCCGCCGGCaGaa--GGUG-------------UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 212362 0.69 0.784125
Target:  5'- gCGAGcUGGCCGcCUacgCCgACGCCGACGu -3'
miRNA:   3'- -GCUCcGCCGGCaGAa--GG-UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 225439 0.69 0.766381
Target:  5'- uGAGGCGGaCGauggCUUCCGUACCGaACAc -3'
miRNA:   3'- gCUCCGCCgGCa---GAAGGUGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 108655 0.69 0.748205
Target:  5'- aCGGGGCGGUCcacauGUacUCCcCGCCGACGa -3'
miRNA:   3'- -GCUCCGCCGG-----CAgaAGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 134170 0.69 0.784125
Target:  5'- aCGGGGa-GCCGUCUUCCcCucCCGGCc -3'
miRNA:   3'- -GCUCCgcCGGCAGAAGGuGu-GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 157822 0.69 0.775311
Target:  5'- gGGGGcCGGCCGcgacCUUCUACAagCGGCAc -3'
miRNA:   3'- gCUCC-GCCGGCa---GAAGGUGUg-GCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.