miRNA display CGI


Results 61 - 80 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 192686 0.69 0.76097
Target:  5'- gGAGGUguggcggcgcgccgaGGCCGUCUUCUACuucuCCGcCGc -3'
miRNA:   3'- gCUCCG---------------CCGGCAGAAGGUGu---GGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 197153 0.69 0.766381
Target:  5'- -aAGGUcgccacGGCCGUCUUCCAC-CCG-CGc -3'
miRNA:   3'- gcUCCG------CCGGCAGAAGGUGuGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 157822 0.69 0.775311
Target:  5'- gGGGGcCGGCCGcgacCUUCUACAagCGGCAc -3'
miRNA:   3'- gCUCC-GCCGGCa---GAAGGUGUg-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 134170 0.69 0.784125
Target:  5'- aCGGGGa-GCCGUCUUCCcCucCCGGCc -3'
miRNA:   3'- -GCUCCgcCGGCAGAAGGuGu-GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 1976 0.69 0.775311
Target:  5'- gGAGGCGGCgCGUCcgucUCCGCcuCgGACu -3'
miRNA:   3'- gCUCCGCCG-GCAGa---AGGUGu-GgCUGu -5'
8985 3' -58.5 NC_002512.2 + 133655 0.69 0.756433
Target:  5'- cCGGGGCGGUCGcCgccgCCGCcgcggccgccgugGCCGACc -3'
miRNA:   3'- -GCUCCGCCGGCaGaa--GGUG-------------UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 108460 0.69 0.748205
Target:  5'- cCGGGGCcgacuccgcGGgCGUCUcccUCCACGCCaGGCGc -3'
miRNA:   3'- -GCUCCG---------CCgGCAGA---AGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 95642 0.68 0.834159
Target:  5'- gGGGGCGGCuCGg---CCGCccCCGGCAc -3'
miRNA:   3'- gCUCCGCCG-GCagaaGGUGu-GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 225602 0.68 0.826196
Target:  5'- uCGAccaGCuGGCCGUCgucgUCCGguCCGACGa -3'
miRNA:   3'- -GCUc--CG-CCGGCAGa---AGGUguGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 98682 0.68 0.837299
Target:  5'- uCGAGcGCcuGGCCGcgcacgacuacgcgcUCUUCCACugCGAgAa -3'
miRNA:   3'- -GCUC-CG--CCGGC---------------AGAAGGUGugGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 12304 0.68 0.834159
Target:  5'- cCGAGGCGGCg--CcgCCGgACCGGCu -3'
miRNA:   3'- -GCUCCGCCGgcaGaaGGUgUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 123414 0.68 0.825391
Target:  5'- gCGAGGCGGUCGaggUCC-CGCCGcccgugcGCAg -3'
miRNA:   3'- -GCUCCGCCGGCagaAGGuGUGGC-------UGU- -5'
8985 3' -58.5 NC_002512.2 + 47457 0.68 0.818073
Target:  5'- gGAGGCcgaGGCCGagUUCCGCAa-GGCGg -3'
miRNA:   3'- gCUCCG---CCGGCagAAGGUGUggCUGU- -5'
8985 3' -58.5 NC_002512.2 + 37273 0.68 0.818073
Target:  5'- uGAGGCcGCCGUCgcCCGC-CgCGGCGc -3'
miRNA:   3'- gCUCCGcCGGCAGaaGGUGuG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 135680 0.68 0.809797
Target:  5'- gGAGGCGGCgCucagCgaCCGCAUCGACu -3'
miRNA:   3'- gCUCCGCCG-Gca--GaaGGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 81610 0.68 0.808962
Target:  5'- uGAGGUgcucgucggccagGGCCGUCgccacgUCCAgGCuCGGCGc -3'
miRNA:   3'- gCUCCG-------------CCGGCAGa-----AGGUgUG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 103219 0.68 0.818073
Target:  5'- cCGAGGCGGCucgCGUCg-CCGCccgUCGACGg -3'
miRNA:   3'- -GCUCCGCCG---GCAGaaGGUGu--GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 53864 0.68 0.792816
Target:  5'- aGAGGgGGaCCGUCcgUUCCccagGgACCGACGg -3'
miRNA:   3'- gCUCCgCC-GGCAG--AAGG----UgUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 100500 0.68 0.834159
Target:  5'- gGAGGCcgcGGUCGUCgagcacCCGCACgaGACAg -3'
miRNA:   3'- gCUCCG---CCGGCAGaa----GGUGUGg-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 95855 0.68 0.834159
Target:  5'- gGGGGCGG-CGUCcUCCcagggccgcGCGCCGAgGa -3'
miRNA:   3'- gCUCCGCCgGCAGaAGG---------UGUGGCUgU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.