miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 146723 0.68 0.801376
Target:  5'- gCGGGGCGGCgGcCgcggCCGCcgggcCCGACGa -3'
miRNA:   3'- -GCUCCGCCGgCaGaa--GGUGu----GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 146963 0.68 0.801376
Target:  5'- aCGAcGGCGGCCGcggccgagaCUUCCGCuGCCuGACc -3'
miRNA:   3'- -GCU-CCGCCGGCa--------GAAGGUG-UGG-CUGu -5'
8985 3' -58.5 NC_002512.2 + 12304 0.68 0.834159
Target:  5'- cCGAGGCGGCg--CcgCCGgACCGGCu -3'
miRNA:   3'- -GCUCCGCCGgcaGaaGGUgUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 98682 0.68 0.837299
Target:  5'- uCGAGcGCcuGGCCGcgcacgacuacgcgcUCUUCCACugCGAgAa -3'
miRNA:   3'- -GCUC-CG--CCGGC---------------AGAAGGUGugGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 7760 0.68 0.834159
Target:  5'- cCGGGGCGGuaGUCggCCGCGgaGAUg -3'
miRNA:   3'- -GCUCCGCCggCAGaaGGUGUggCUGu -5'
8985 3' -58.5 NC_002512.2 + 136187 0.68 0.834159
Target:  5'- gCGGGGUcGCCGggaUCgcgUCgACGCCGGCGg -3'
miRNA:   3'- -GCUCCGcCGGC---AGa--AGgUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 173790 0.68 0.834159
Target:  5'- aCGAGGacaaGGCCGcCUUCCAgcUCGAUc -3'
miRNA:   3'- -GCUCCg---CCGGCaGAAGGUguGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 100500 0.68 0.834159
Target:  5'- gGAGGCcgcGGUCGUCgagcacCCGCACgaGACAg -3'
miRNA:   3'- gCUCCG---CCGGCAGaa----GGUGUGg-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 95855 0.68 0.834159
Target:  5'- gGGGGCGG-CGUCcUCCcagggccgcGCGCCGAgGa -3'
miRNA:   3'- gCUCCGCCgGCAGaAGG---------UGUGGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 95642 0.68 0.834159
Target:  5'- gGGGGCGGCuCGg---CCGCccCCGGCAc -3'
miRNA:   3'- gCUCCGCCG-GCagaaGGUGu-GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 225602 0.68 0.826196
Target:  5'- uCGAccaGCuGGCCGUCgucgUCCGguCCGACGa -3'
miRNA:   3'- -GCUc--CG-CCGGCAGa---AGGUguGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 219433 0.68 0.826196
Target:  5'- gCGGcGGCGGCC-UCcUCCGCGCCcccgugcccGACGg -3'
miRNA:   3'- -GCU-CCGCCGGcAGaAGGUGUGG---------CUGU- -5'
8985 3' -58.5 NC_002512.2 + 101656 0.68 0.834159
Target:  5'- gCGcGGCGGCCG-CggacgCCGgGCCGAUc -3'
miRNA:   3'- -GCuCCGCCGGCaGaa---GGUgUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 156836 0.68 0.825391
Target:  5'- gCGAGGCcugcgggGGCCG-CUgcugCCACACCuGCu -3'
miRNA:   3'- -GCUCCG-------CCGGCaGAa---GGUGUGGcUGu -5'
8985 3' -58.5 NC_002512.2 + 189634 0.68 0.808962
Target:  5'- uCGucGCGGUCGgCUUCgucgggaCGCGCCGACAc -3'
miRNA:   3'- -GCucCGCCGGCaGAAG-------GUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 220547 0.68 0.801376
Target:  5'- gCGAgGGCGucacGCCGUCUaCCugGCCGuGCGc -3'
miRNA:   3'- -GCU-CCGC----CGGCAGAaGGugUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 10649 0.67 0.878246
Target:  5'- aGAGGCGGCCGagcacgaUCCcgaccuCGCCGAg- -3'
miRNA:   3'- gCUCCGCCGGCaga----AGGu-----GUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 120779 0.67 0.871366
Target:  5'- --cGGCGGCCGUCggCgGgGgCGGCGg -3'
miRNA:   3'- gcuCCGCCGGCAGaaGgUgUgGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 118904 0.67 0.857029
Target:  5'- -cGGGCGGCC-UCggUC-CACCGGCGg -3'
miRNA:   3'- gcUCCGCCGGcAGaaGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 68902 0.67 0.841957
Target:  5'- cCGGGGCGGUCGUgCUgcuggCCGC-CgCGGCc -3'
miRNA:   3'- -GCUCCGCCGGCA-GAa----GGUGuG-GCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.