miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 204848 0.7 0.710811
Target:  5'- aCGAcGGCGGUCGgucCUcguggaggUCCGCgACCGACGg -3'
miRNA:   3'- -GCU-CCGCCGGCa--GA--------AGGUG-UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 103441 0.7 0.710811
Target:  5'- -aAGGCGGCCG-CcgCCGuCGCCGGCc -3'
miRNA:   3'- gcUCCGCCGGCaGaaGGU-GUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 122050 0.7 0.710811
Target:  5'- cCGGGGCGG-CGUCggCgGCugUGACGa -3'
miRNA:   3'- -GCUCCGCCgGCAGaaGgUGugGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 82012 0.7 0.714603
Target:  5'- uCGcGGCGaGCCGUCgcccgggucggggUCGCGCCGGCGg -3'
miRNA:   3'- -GCuCCGC-CGGCAGaa-----------GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 147642 0.7 0.72027
Target:  5'- aCGGcGGCGGCCG-CUcCCGCuACCGuCAc -3'
miRNA:   3'- -GCU-CCGCCGGCaGAaGGUG-UGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 207493 0.7 0.72027
Target:  5'- --cGGCGcCCGUCUccggaUCCGCgACCGACGa -3'
miRNA:   3'- gcuCCGCcGGCAGA-----AGGUG-UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 122103 0.7 0.72027
Target:  5'- gCGAGGuCGGCgcugaCGUCggCCGCGCUgGACAg -3'
miRNA:   3'- -GCUCC-GCCG-----GCAGaaGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 169025 0.7 0.729661
Target:  5'- -cGGGCGGgCGUCcgcgagCgGCGCCGGCAu -3'
miRNA:   3'- gcUCCGCCgGCAGaa----GgUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 185387 0.7 0.729661
Target:  5'- gCGGcGGCugcgaGGCCGUCUucUCCGC-CCGGCc -3'
miRNA:   3'- -GCU-CCG-----CCGGCAGA--AGGUGuGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 124081 0.69 0.742677
Target:  5'- gGGGGCuucuccGCCGUCUUcgcccucgccgucgaCCAUGCCGACGc -3'
miRNA:   3'- gCUCCGc-----CGGCAGAA---------------GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 108655 0.69 0.748205
Target:  5'- aCGGGGCGGUCcacauGUacUCCcCGCCGACGa -3'
miRNA:   3'- -GCUCCGCCGG-----CAgaAGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 108460 0.69 0.748205
Target:  5'- cCGGGGCcgacuccgcGGgCGUCUcccUCCACGCCaGGCGc -3'
miRNA:   3'- -GCUCCG---------CCgGCAGA---AGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 124928 0.69 0.748205
Target:  5'- aCGAGaGacacgaGGCCGgcg-CCGCGCCGACGc -3'
miRNA:   3'- -GCUC-Cg-----CCGGCagaaGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 133655 0.69 0.756433
Target:  5'- cCGGGGCGGUCGcCgccgCCGCcgcggccgccgugGCCGACc -3'
miRNA:   3'- -GCUCCGCCGGCaGaa--GGUG-------------UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 226685 0.69 0.757343
Target:  5'- uGAGcGCcgGGCCGUCgcCCGCGgCGGCGu -3'
miRNA:   3'- gCUC-CG--CCGGCAGaaGGUGUgGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 192686 0.69 0.76097
Target:  5'- gGAGGUguggcggcgcgccgaGGCCGUCUUCUACuucuCCGcCGc -3'
miRNA:   3'- gCUCCG---------------CCGGCAGAAGGUGu---GGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 197153 0.69 0.766381
Target:  5'- -aAGGUcgccacGGCCGUCUUCCAC-CCG-CGc -3'
miRNA:   3'- gcUCCG------CCGGCAGAAGGUGuGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 225439 0.69 0.766381
Target:  5'- uGAGGCGGaCGauggCUUCCGUACCGaACAc -3'
miRNA:   3'- gCUCCGCCgGCa---GAAGGUGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 201797 0.69 0.775311
Target:  5'- aCGGGGCGgcgaccucuccGCCGUCUccgCCGCGCCcgggGGCu -3'
miRNA:   3'- -GCUCCGC-----------CGGCAGAa--GGUGUGG----CUGu -5'
8985 3' -58.5 NC_002512.2 + 1976 0.69 0.775311
Target:  5'- gGAGGCGGCgCGUCcgucUCCGCcuCgGACu -3'
miRNA:   3'- gCUCCGCCG-GCAGa---AGGUGu-GgCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.