miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 151073 0.69 0.775311
Target:  5'- gGGGGauGCgGUCUcggUCCGCGCCGGa- -3'
miRNA:   3'- gCUCCgcCGgCAGA---AGGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 157822 0.69 0.775311
Target:  5'- gGGGGcCGGCCGcgacCUUCUACAagCGGCAc -3'
miRNA:   3'- gCUCC-GCCGGCa---GAAGGUGUg-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 212362 0.69 0.784125
Target:  5'- gCGAGcUGGCCGcCUacgCCgACGCCGACGu -3'
miRNA:   3'- -GCUCcGCCGGCaGAa--GG-UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 96268 0.69 0.784125
Target:  5'- aCGAGGCGacgaucgaGCCGUaggUCCGCaggagGCCGGCc -3'
miRNA:   3'- -GCUCCGC--------CGGCAga-AGGUG-----UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 201883 0.69 0.784125
Target:  5'- aCGGcGGCGGCuucucCGUCUccCCGCGCCGGa- -3'
miRNA:   3'- -GCU-CCGCCG-----GCAGAa-GGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 175775 0.69 0.784125
Target:  5'- gCGGGGUGGUcaCGUCg--CAgGCCGACAg -3'
miRNA:   3'- -GCUCCGCCG--GCAGaagGUgUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 134170 0.69 0.784125
Target:  5'- aCGGGGa-GCCGUCUUCCcCucCCGGCc -3'
miRNA:   3'- -GCUCCgcCGGCAGAAGGuGu-GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 160903 0.68 0.791088
Target:  5'- gCGGGGCGGCCGgggcaagggacgCggacagUCGCugCGGCGg -3'
miRNA:   3'- -GCUCCGCCGGCa-----------Gaa----GGUGugGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 166299 0.68 0.792816
Target:  5'- aCGAGGCGGCCGcgUCgcccaaCCugGCCa--- -3'
miRNA:   3'- -GCUCCGCCGGC--AGaa----GGugUGGcugu -5'
8985 3' -58.5 NC_002512.2 + 53864 0.68 0.792816
Target:  5'- aGAGGgGGaCCGUCcgUUCCccagGgACCGACGg -3'
miRNA:   3'- gCUCCgCC-GGCAG--AAGG----UgUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 220547 0.68 0.801376
Target:  5'- gCGAgGGCGucacGCCGUCUaCCugGCCGuGCGc -3'
miRNA:   3'- -GCU-CCGC----CGGCAGAaGGugUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 146963 0.68 0.801376
Target:  5'- aCGAcGGCGGCCGcggccgagaCUUCCGCuGCCuGACc -3'
miRNA:   3'- -GCU-CCGCCGGCa--------GAAGGUG-UGG-CUGu -5'
8985 3' -58.5 NC_002512.2 + 146723 0.68 0.801376
Target:  5'- gCGGGGCGGCgGcCgcggCCGCcgggcCCGACGa -3'
miRNA:   3'- -GCUCCGCCGgCaGaa--GGUGu----GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 81610 0.68 0.808962
Target:  5'- uGAGGUgcucgucggccagGGCCGUCgccacgUCCAgGCuCGGCGc -3'
miRNA:   3'- gCUCCG-------------CCGGCAGa-----AGGUgUG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 189634 0.68 0.808962
Target:  5'- uCGucGCGGUCGgCUUCgucgggaCGCGCCGACAc -3'
miRNA:   3'- -GCucCGCCGGCaGAAG-------GUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 135680 0.68 0.809797
Target:  5'- gGAGGCGGCgCucagCgaCCGCAUCGACu -3'
miRNA:   3'- gCUCCGCCG-Gca--GaaGGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 47457 0.68 0.818073
Target:  5'- gGAGGCcgaGGCCGagUUCCGCAa-GGCGg -3'
miRNA:   3'- gCUCCG---CCGGCagAAGGUGUggCUGU- -5'
8985 3' -58.5 NC_002512.2 + 37273 0.68 0.818073
Target:  5'- uGAGGCcGCCGUCgcCCGC-CgCGGCGc -3'
miRNA:   3'- gCUCCGcCGGCAGaaGGUGuG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 103219 0.68 0.818073
Target:  5'- cCGAGGCGGCucgCGUCg-CCGCccgUCGACGg -3'
miRNA:   3'- -GCUCCGCCG---GCAGaaGGUGu--GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 156836 0.68 0.825391
Target:  5'- gCGAGGCcugcgggGGCCG-CUgcugCCACACCuGCu -3'
miRNA:   3'- -GCUCCG-------CCGGCaGAa---GGUGUGGcUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.