Results 81 - 100 of 165 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 156836 | 0.68 | 0.825391 |
Target: 5'- gCGAGGCcugcgggGGCCG-CUgcugCCACACCuGCu -3' miRNA: 3'- -GCUCCG-------CCGGCaGAa---GGUGUGGcUGu -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 219433 | 0.68 | 0.826196 |
Target: 5'- gCGGcGGCGGCC-UCcUCCGCGCCcccgugcccGACGg -3' miRNA: 3'- -GCU-CCGCCGGcAGaAGGUGUGG---------CUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 118077 | 0.68 | 0.826196 |
Target: 5'- gGAGGgGGCgG-CUcCgGCGCCGGCGg -3' miRNA: 3'- gCUCCgCCGgCaGAaGgUGUGGCUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 10162 | 0.68 | 0.826196 |
Target: 5'- gCGAGGCacgggGGCCGccUCUcgcgCCccgaGCGCCGACGc -3' miRNA: 3'- -GCUCCG-----CCGGC--AGAa---GG----UGUGGCUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 152740 | 0.68 | 0.826196 |
Target: 5'- gGGGGCGGUCGgaaggUCC-C-CCGACGg -3' miRNA: 3'- gCUCCGCCGGCaga--AGGuGuGGCUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 218910 | 0.68 | 0.826196 |
Target: 5'- gCGGGGCGGCuCGUgccgCUgCCcuggcccgaggGCGCCGGCGu -3' miRNA: 3'- -GCUCCGCCG-GCA----GAaGG-----------UGUGGCUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 225602 | 0.68 | 0.826196 |
Target: 5'- uCGAccaGCuGGCCGUCgucgUCCGguCCGACGa -3' miRNA: 3'- -GCUc--CG-CCGGCAGa---AGGUguGGCUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 12304 | 0.68 | 0.834159 |
Target: 5'- cCGAGGCGGCg--CcgCCGgACCGGCu -3' miRNA: 3'- -GCUCCGCCGgcaGaaGGUgUGGCUGu -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 173790 | 0.68 | 0.834159 |
Target: 5'- aCGAGGacaaGGCCGcCUUCCAgcUCGAUc -3' miRNA: 3'- -GCUCCg---CCGGCaGAAGGUguGGCUGu -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 95642 | 0.68 | 0.834159 |
Target: 5'- gGGGGCGGCuCGg---CCGCccCCGGCAc -3' miRNA: 3'- gCUCCGCCG-GCagaaGGUGu-GGCUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 101656 | 0.68 | 0.834159 |
Target: 5'- gCGcGGCGGCCG-CggacgCCGgGCCGAUc -3' miRNA: 3'- -GCuCCGCCGGCaGaa---GGUgUGGCUGu -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 95855 | 0.68 | 0.834159 |
Target: 5'- gGGGGCGG-CGUCcUCCcagggccgcGCGCCGAgGa -3' miRNA: 3'- gCUCCGCCgGCAGaAGG---------UGUGGCUgU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 136187 | 0.68 | 0.834159 |
Target: 5'- gCGGGGUcGCCGggaUCgcgUCgACGCCGGCGg -3' miRNA: 3'- -GCUCCGcCGGC---AGa--AGgUGUGGCUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 100500 | 0.68 | 0.834159 |
Target: 5'- gGAGGCcgcGGUCGUCgagcacCCGCACgaGACAg -3' miRNA: 3'- gCUCCG---CCGGCAGaa----GGUGUGg-CUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 7760 | 0.68 | 0.834159 |
Target: 5'- cCGGGGCGGuaGUCggCCGCGgaGAUg -3' miRNA: 3'- -GCUCCGCCggCAGaaGGUGUggCUGu -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 98682 | 0.68 | 0.837299 |
Target: 5'- uCGAGcGCcuGGCCGcgcacgacuacgcgcUCUUCCACugCGAgAa -3' miRNA: 3'- -GCUC-CG--CCGGC---------------AGAAGGUGugGCUgU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 217681 | 0.67 | 0.841957 |
Target: 5'- cCGGGcGCuugGGCUGgcUCUUCCcCGCCGGCGu -3' miRNA: 3'- -GCUC-CG---CCGGC--AGAAGGuGUGGCUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 116672 | 0.67 | 0.841957 |
Target: 5'- uCGuGGCGGaCCG-CgagCCGCugGCCGACGc -3' miRNA: 3'- -GCuCCGCC-GGCaGaa-GGUG--UGGCUGU- -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 68902 | 0.67 | 0.841957 |
Target: 5'- cCGGGGCGGUCGUgCUgcuggCCGC-CgCGGCc -3' miRNA: 3'- -GCUCCGCCGGCA-GAa----GGUGuG-GCUGu -5' |
|||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 99409 | 0.67 | 0.841957 |
Target: 5'- cCGGGGCGGCuuCGUCU-CCGCcCCcGCu -3' miRNA: 3'- -GCUCCGCCG--GCAGAaGGUGuGGcUGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home