miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 115773 0.67 0.871366
Target:  5'- --cGGUGGCCGUgcCgugCUACugCGACGa -3'
miRNA:   3'- gcuCCGCCGGCA--Gaa-GGUGugGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 120779 0.67 0.871366
Target:  5'- --cGGCGGCCGUCggCgGgGgCGGCGg -3'
miRNA:   3'- gcuCCGCCGGCAGaaGgUgUgGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 113339 0.67 0.864292
Target:  5'- -cAGGCGGCCGUUcaUCCccaGCAgCUGGCAc -3'
miRNA:   3'- gcUCCGCCGGCAGa-AGG---UGU-GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 105617 0.67 0.864292
Target:  5'- cCGAGGCaccGGCCGUCgucggucUCCGagacCCGGCc -3'
miRNA:   3'- -GCUCCG---CCGGCAGa------AGGUgu--GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 185198 0.67 0.864292
Target:  5'- aCGcGGCGGCgGUCgacgCCGCGgUGGCc -3'
miRNA:   3'- -GCuCCGCCGgCAGaa--GGUGUgGCUGu -5'
8985 3' -58.5 NC_002512.2 + 92733 0.67 0.864292
Target:  5'- gGGGGCGcGCuCGg--UCCgaugGCGCCGACGa -3'
miRNA:   3'- gCUCCGC-CG-GCagaAGG----UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 207523 0.67 0.864292
Target:  5'- aCGAGGacggGGCCGcgucCUcCCGCugCGACu -3'
miRNA:   3'- -GCUCCg---CCGGCa---GAaGGUGugGCUGu -5'
8985 3' -58.5 NC_002512.2 + 220214 0.67 0.864292
Target:  5'- cCGAcGGCGGCCcgggggacgaGUgCgcccgCCugGCCGACAu -3'
miRNA:   3'- -GCU-CCGCCGG----------CA-Gaa---GGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 98010 0.67 0.864292
Target:  5'- aCGugcuGGUGGCCGUCcugaUCCGC-CgCGGCGu -3'
miRNA:   3'- -GCu---CCGCCGGCAGa---AGGUGuG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 185433 0.67 0.863574
Target:  5'- gGAGGUcuucgaGGCCGUCcugUCCGCccucugcuccuucGCCGugGu -3'
miRNA:   3'- gCUCCG------CCGGCAGa--AGGUG-------------UGGCugU- -5'
8985 3' -58.5 NC_002512.2 + 98583 0.67 0.857029
Target:  5'- -cGGGCGGCgGgUCgUCCGCGCUGcACGu -3'
miRNA:   3'- gcUCCGCCGgC-AGaAGGUGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 222013 0.67 0.857029
Target:  5'- --cGGUGGCCG-CguaCCACaagACCGACAg -3'
miRNA:   3'- gcuCCGCCGGCaGaa-GGUG---UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 227787 0.67 0.857029
Target:  5'- cCGAGccGCGGCCGUaccgcccgCUcCCGC-CCGGCGu -3'
miRNA:   3'- -GCUC--CGCCGGCA--------GAaGGUGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 149007 0.67 0.857029
Target:  5'- cCGGGG-GGCCGcCgcggaCCGC-CCGACAc -3'
miRNA:   3'- -GCUCCgCCGGCaGaa---GGUGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 113269 0.67 0.857029
Target:  5'- gGGGGCGGCCGgcggggCagCCGCGgCGGg- -3'
miRNA:   3'- gCUCCGCCGGCa-----GaaGGUGUgGCUgu -5'
8985 3' -58.5 NC_002512.2 + 28236 0.67 0.857029
Target:  5'- cCGcGGCcggGGCCGUCgcgCCGCGaguaCGACGg -3'
miRNA:   3'- -GCuCCG---CCGGCAGaa-GGUGUg---GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 99109 0.67 0.857029
Target:  5'- --cGGCGGCCcuccUCguggUCCGCGCCGcgGCGa -3'
miRNA:   3'- gcuCCGCCGGc---AGa---AGGUGUGGC--UGU- -5'
8985 3' -58.5 NC_002512.2 + 118904 0.67 0.857029
Target:  5'- -cGGGCGGCC-UCggUC-CACCGGCGg -3'
miRNA:   3'- gcUCCGCCGGcAGaaGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 129872 0.67 0.857029
Target:  5'- aCGGcGGCGggggauucGCCGUCgcCCuCGCCGACGa -3'
miRNA:   3'- -GCU-CCGC--------CGGCAGaaGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 153276 0.67 0.852582
Target:  5'- gCGAuGGCGGCCccggacagacgUCCgACGCCGGCGu -3'
miRNA:   3'- -GCU-CCGCCGGcaga-------AGG-UGUGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.