Results 61 - 80 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 153276 | 0.67 | 0.852582 |
Target: 5'- gCGAuGGCGGCCccggacagacgUCCgACGCCGGCGu -3' miRNA: 3'- -GCU-CCGCCGGcaga-------AGG-UGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 98128 | 0.67 | 0.849582 |
Target: 5'- cCGGGGCgcuGGUCGUCgcggCCGCccgccCCGGCGg -3' miRNA: 3'- -GCUCCG---CCGGCAGaa--GGUGu----GGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 91869 | 0.67 | 0.849582 |
Target: 5'- cCGAGGCcGCCGUC--CgGCGCgGGCGg -3' miRNA: 3'- -GCUCCGcCGGCAGaaGgUGUGgCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 6316 | 0.67 | 0.849582 |
Target: 5'- uCGAGGUGGCCGcCgcCCGCggggggACCGGg- -3' miRNA: 3'- -GCUCCGCCGGCaGaaGGUG------UGGCUgu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 84643 | 0.67 | 0.849582 |
Target: 5'- aGGcGGCGGCCcaggaaguUCUcgUCGCGCCGGCAc -3' miRNA: 3'- gCU-CCGCCGGc-------AGAa-GGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 116672 | 0.67 | 0.841957 |
Target: 5'- uCGuGGCGGaCCG-CgagCCGCugGCCGACGc -3' miRNA: 3'- -GCuCCGCC-GGCaGaa-GGUG--UGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 99409 | 0.67 | 0.841957 |
Target: 5'- cCGGGGCGGCuuCGUCU-CCGCcCCcGCu -3' miRNA: 3'- -GCUCCGCCG--GCAGAaGGUGuGGcUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 217681 | 0.67 | 0.841957 |
Target: 5'- cCGGGcGCuugGGCUGgcUCUUCCcCGCCGGCGu -3' miRNA: 3'- -GCUC-CG---CCGGC--AGAAGGuGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 68902 | 0.67 | 0.841957 |
Target: 5'- cCGGGGCGGUCGUgCUgcuggCCGC-CgCGGCc -3' miRNA: 3'- -GCUCCGCCGGCA-GAa----GGUGuG-GCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 98682 | 0.68 | 0.837299 |
Target: 5'- uCGAGcGCcuGGCCGcgcacgacuacgcgcUCUUCCACugCGAgAa -3' miRNA: 3'- -GCUC-CG--CCGGC---------------AGAAGGUGugGCUgU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 95855 | 0.68 | 0.834159 |
Target: 5'- gGGGGCGG-CGUCcUCCcagggccgcGCGCCGAgGa -3' miRNA: 3'- gCUCCGCCgGCAGaAGG---------UGUGGCUgU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 12304 | 0.68 | 0.834159 |
Target: 5'- cCGAGGCGGCg--CcgCCGgACCGGCu -3' miRNA: 3'- -GCUCCGCCGgcaGaaGGUgUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 136187 | 0.68 | 0.834159 |
Target: 5'- gCGGGGUcGCCGggaUCgcgUCgACGCCGGCGg -3' miRNA: 3'- -GCUCCGcCGGC---AGa--AGgUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 95642 | 0.68 | 0.834159 |
Target: 5'- gGGGGCGGCuCGg---CCGCccCCGGCAc -3' miRNA: 3'- gCUCCGCCG-GCagaaGGUGu-GGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 173790 | 0.68 | 0.834159 |
Target: 5'- aCGAGGacaaGGCCGcCUUCCAgcUCGAUc -3' miRNA: 3'- -GCUCCg---CCGGCaGAAGGUguGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 100500 | 0.68 | 0.834159 |
Target: 5'- gGAGGCcgcGGUCGUCgagcacCCGCACgaGACAg -3' miRNA: 3'- gCUCCG---CCGGCAGaa----GGUGUGg-CUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 7760 | 0.68 | 0.834159 |
Target: 5'- cCGGGGCGGuaGUCggCCGCGgaGAUg -3' miRNA: 3'- -GCUCCGCCggCAGaaGGUGUggCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 101656 | 0.68 | 0.834159 |
Target: 5'- gCGcGGCGGCCG-CggacgCCGgGCCGAUc -3' miRNA: 3'- -GCuCCGCCGGCaGaa---GGUgUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 10162 | 0.68 | 0.826196 |
Target: 5'- gCGAGGCacgggGGCCGccUCUcgcgCCccgaGCGCCGACGc -3' miRNA: 3'- -GCUCCG-----CCGGC--AGAa---GG----UGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 152740 | 0.68 | 0.826196 |
Target: 5'- gGGGGCGGUCGgaaggUCC-C-CCGACGg -3' miRNA: 3'- gCUCCGCCGGCaga--AGGuGuGGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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